Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00667 ATGCCTCAATGCTATGGCATCTCCATAATACCACACCCTTTACCCTATCCGTTCTTCTCACTCTCTCTTTCTCTCTCTTCACTCTCCGCCATGGCCCCAGCCGCCGGAGCCGTCGCGTTGCACTCTTCCCTTTGCTCCACCGCTTCTGAGAAACCGTATTCTCCTCTAAGATCAACCCTTCTGCATGTGGCACCCAAACCCAAAAGCCTCCTCCAAAATCACCCACTTTACCCTCCAACCCACGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTGGAGGTAATGGGTATTGATGCAGGCAAAGCACTCTCCCAAAACCCTGATCTTCGCACAGCCACCATGGAATCCATACAGTCCATCATCACCTTCCTTTTCTCCAATGGCATTCTTGAGAAGGACCTGCCCAGAATCTTTGGCATGTGCCCCAAGATTCTCACTGCCGACATCAAAACTGATCTCACCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTCCCCGAAAATAGCTTCAGGAGGGTGATCAATAAGTGCCCAAGATTGCTTACATCTAGTGTGAAAGACCAGCTCAGGCCAGCTTTGCTTTACCTAAGGAGACTTGGATTCAAGGATTCCGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTGGTGTCTAATGTAGAACACACCCTCATCCCTAAACTTAGATTTTTGGAGACTTTGGGACTTTCCAAGGATGAGATTAGGAGTATGGTGTTGAGATGCCCAGCACTGCTCACTTTCAGTATAGAGAATAACTTTCAGCCAAAGTATGACTATTTTGCTGGGGAAATGGGAAGGAAAGTGGTGGAGCTGAAAGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAAAACAGGATAAAACCCAGACACACCGAGGTTGTGCAGAGTGGAATCACTTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGTTGTTAAAGCAGGGAGGTGGGTGA 999 0.4655 MPQCYGISIIPHPLPYPFFSLSLSLSSLSAMAPAAGAVALHSSLCSTASEKPYSPLRSTLLHVAPKPKSLLQNHPLYPPTHAKLSLEFKEKILCLEVMGIDAGKALSQNPDLRTATMESIQSIITFLFSNGILEKDLPRIFGMCPKILTADIKTDLTPVFDFILNELKVPENSFRRVINKCPRLLTSSVKDQLRPALLYLRRLGFKDSGALAYQDSVLLVSNVEHTLIPKLRFLETLGLSKDEIRSMVLRCPALLTFSIENNFQPKYDYFAGEMGRKVVELKEFPQYFAFSLENRIKPRHTEVVQSGITLPLSVMLKSTDEEFRELLKQGGG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00667 332 FunFam Transcription termination factor MTEF1, chloroplastic 163 330 - -
Vimu10g00667 332 Gene3D Transcription termination factor 3, mitochondrial 164 329 IPR038538 -
Vimu10g00667 332 PANTHER CGI-12 PROTEIN-RELATED 58 325 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 SMART mt_12 175 206 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 SMART mt_12 138 170 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 SMART mt_12 209 240 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 SMART mt_12 278 309 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 SMART mt_12 245 277 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 Pfam mTERF 95 207 IPR003690 GO:0003690|GO:0006355
Vimu10g00667 332 Pfam mTERF 218 323 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00667 Vimu-Chr10 5694870 5695868 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00667 mTERF 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00667 K15031 - gmx:100788221 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00667 10 5694870 5695868 Vimu10g00667 10 5694870 5695868 ECH