Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00659 ATGAGGCAGAAGGGTGATGCGATGAGGCAGACTTTTGATCCTTCTTCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATTGGGGAATGGTACGTGGGAGGCTTTGTCTGGATCTGATTCTTACCATGCATCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGGTGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGGTACTCATGCTGTTGGACCTGTGCTTCCTGATGACGAGGAGGAGCTTTTAGCCGGCATAATGGATGATTTTGACCTTAGTGGATTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAGGTCTCTCTGTGGGTATTTCTAAGTTAAGCTTTGCTGATAGTTCTGTTGGCAATGGTTTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCATCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCACTTTTTGAGCTATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGTTTTGTTATGATATCCTATTATGACATCCGTGCTGCTAGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTCATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGAAGAAAGTGCTTGAACCAAGAGCTTGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATTCTGAGCCCAACAACAAGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAATACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGAAGCAGTCAAGGAGAGCACATATTTACGGGTTTGAATTCTTCACAAGGATCTAGTTTTCAATCACATTCGCTCCCCGAGCCAAAATTCAGCCAGTATCGTGGAGCGTTGCCCTCCTTTGCTCCATCAACTTCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTCCTTTGGGGAAGCCCAACCCTCTACTCTGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTTGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATTTTCTACTCAGAATAGCTCTTTTGTTGGTTCATCACAGCATCATCACAATCATCACGTTGGCTCTGCTCCATCAGGTTTGCCTTTTGAGAGACACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTTTAGGGCCCACAGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATGCTAACATTACTATCCCAAGAAATATATCTGATAATGGGTCATCAAACTTCAGAATGAGATCTCCCAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTTCCACTTTGGAGGGTTTGGCTGACCGTGCTCGGGGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGATTTGGATAAAATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAACAAGTATGCCGCTATTGATGAAAATCACAGGGGTACTTACGATTTTCTCTACCTGCCAATTGACTTTAAGGTATATAATTTGCTCTTCCAGGAGTTGTTTATTATTCCTAATAAATGCAACGTGGGCTATGCATTCATCAATATGCTGTCACCTTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGACAGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGTCCTATTCTTTTCCATTCAGAGGGTTCTGAAGCTGGTGATCTGATAGTACAAGAGCATCTTCCCGCCAACCCCAACAATGTAAACATTCAGGGACTAAGGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGCCCTCCAAACACAGGCCCTTCTGCAAACTTGGATGCAAAATAG 2616 0.4232 MRQKGDAMRQTFDPSSLGPSKIPSIKIPGKLGNGTWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVGDISSEFKKLHQDAEGDGSLEDGGTHAVGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQEGLSVGISKLSFADSSVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRKCLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTSNHLPGLASILQPQVSNTVKAAAIGNDLGRSSQGEHIFTGLNSSQGSSFQSHSLPEPKFSQYRGALPSFAPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFTSNGKSHAFPFSTQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGPTDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPSTLEGLADRARGRWIENNVSQADSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYAAIDENHRGTYDFLYLPIDFKVYNLLFQELFIIPNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPANPNNVNIQGLRSSELHSSDFAGSPPNTGPSANLDAK 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00659 871 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Vimu10g00659 871 Pfam RNA recognition motif 2 698 801 IPR007201 -
Vimu10g00659 871 CDD RRM2_MEI2_like 285 355 - -
Vimu10g00659 871 CDD RRM3_MEI2_like 701 793 IPR034454 -
Vimu10g00659 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Vimu10g00659 871 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g00659 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Vimu10g00659 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Vimu10g00659 871 Gene3D - 190 284 IPR012677 -
Vimu10g00659 871 MobiDBLite consensus disorder prediction 851 871 - -
Vimu10g00659 871 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Vimu10g00659 871 SMART rrm1_1 202 270 IPR000504 GO:0003723
Vimu10g00659 871 SMART rrm1_1 287 355 IPR000504 GO:0003723
Vimu10g00659 871 FunFam Protein MEI2-like 1 285 379 - -
Vimu10g00659 871 CDD RRM1_MEI2_like 200 276 IPR034453 -
Vimu10g00659 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Vimu10g00659 871 PANTHER RNA RECOGNITION MOTIF-CONTAINING 48 823 - -
Vimu10g00659 871 MobiDBLite consensus disorder prediction 851 865 - -
Vimu10g00659 871 SUPERFAMILY RNA-binding domain, RBD 700 791 IPR035979 GO:0003676
Vimu10g00659 871 Gene3D - 285 381 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00659 Vimu-Chr10 5631099 5636595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00659 196 391 Eukaryotic Initiation Factors Gene Family AT1G71770 26.364 4.37e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00659 - - gmx:100800877 1546.95