Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00654 ATGGGTCGTCCAAAATTGATTTTGAAACCCATCACAAATGGGAGAGATCGTGATCTGGCTTTGATGAAGAGAAAGAAGGCATTATTTAAGGCAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAATCTTGTTTGATTATGTATGATGGAAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATTCAGAGGTATGAGCGTATGGTGTTTGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGATGAGAAAGAACATAGTTGACAGTGAGATTGCCAAAGTTCAGAAAGAGATCCTTGAGACCAAATATCCCACTTGGCATCCATGCTTCAACAACCTTGGTGCTGAAGAATTGAAGAATTTCATAGCTAGATTGGACAGTAAGCTTGAAGCATGTAATCAACGAACAGTAATGTTCAAATGGAAGAAACAAGATGAAGCCCAATTCAATTTCAAGCAATGCCTGATTCAACCAGAATGTGTTGCTCCAAATCCAAGCCAACTGGTTTTCATGAAGGATATTCTCCAAAACCAACTACTTTTTGCTCCAATGAACCCACTTAATGGTAACCTTGCACCATCTTTCCAACACAATTCTGAAAAAGGCTCCAGTTCTCAATCCCAAAAGCTTAACTTTGATCCAAATCTCATGCAAGTGAAGGCAGAGAACACAGGAGTGGTGGATACATCCAATGCATGCCAAACTGATGTGCTTAAAAATCCTTCAAATAAGTTTGATGTGCCTTATGATTTTCTTGATGAGTCCTTTAATCTTTTTGACCAACTTGGTGAAATACAAAGCTTGAATCAACATTGGGGGAATAATCAACAGGATGCACTTGTGGTTGGAGGAAGTATCACAACAATGAATGTTGGTGTTACTAATGATACAAATTTTCATGGAAATCAATACAATATAGAGAACTCTCTTTGCAATTACAATGGAGTTACGCAATCCTATAACTATGACGCATCATGGCAGGATATTGGTTTTCAGCAACAGAATCTGCAGCACATGGTAACTTTACCTTCATTTCAACCATCAGTAGATAAATTCAGGCAGATCACCACAACTGATAGCTTAAAAATCTGTTATCCTAACATATGA 1140 0.3798 MGRPKLILKPITNGRDRDLALMKRKKALFKAISEFCSVCGVKSCLIMYDGKGDSPPLTWPQDPIEMHSIIQRYERMVFEKIPKNFDLNNFFEMRKNIVDSEIAKVQKEILETKYPTWHPCFNNLGAEELKNFIARLDSKLEACNQRTVMFKWKKQDEAQFNFKQCLIQPECVAPNPSQLVFMKDILQNQLLFAPMNPLNGNLAPSFQHNSEKGSSSQSQKLNFDPNLMQVKAENTGVVDTSNACQTDVLKNPSNKFDVPYDFLDESFNLFDQLGEIQSLNQHWGNNQQDALVVGGSITTMNVGVTNDTNFHGNQYNIENSLCNYNGVTQSYNYDASWQDIGFQQQNLQHMVTLPSFQPSVDKFRQITTTDSLKICYPNI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00654 379 MobiDBLite consensus disorder prediction 202 221 - -
Vimu10g00654 379 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu10g00654 379 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vimu10g00654 379 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Vimu10g00654 379 Coils Coil 126 146 - -
Vimu10g00654 379 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu10g00654 379 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00654 Vimu-Chr10 5581145 5582284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00654 1 150 Type I MADS-box Gene Family AT5G55690 28.387 2.57e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu10g00654 SRF-TF 9.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00654 - - vra:106760100 751.125