Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00651 ATGGAGATCACGAGCAGCCATAACAGCTGCAGCAGTATGATGTGGTTTTTCAAAGATAAAGGGTTTGATGACAACAGTGTGCAAGGAATTTTCCGACGGTGTAAGCGCCTTCAGGATGTGCATCAGGAAAGAGCGAGTGAGAATTGGGAGTATTTGAGAAGCATTGGCATTGAAGAAAGAAAGTTGCCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCGCTGGATCTTTATGACAAGATTATGCCCACGGTTGAGTGTCTCAGGACCCTGGGAACAAAACCACGTGAGGTTGCTACTGCCATAGCCAAGTTCCCTCACATACTCTCAAACAGTGTAGAAGAGAAGCTTTGTCCCCTTTTGGCCTTCTTTCAGGCTTTGGGTATCCCTGAAAAGCATATTGGCAAAATGATACTGCTCAACCCTAGGCTTATAAGTTACAGCATTGAAACAAAGTTGACTGAAATTGTGAACTTTCTTGCTAGCCTTGGTCTCAATAAAGATGGAATGATTGGAAAAGTTATAGTCAAGGATCCCTATATTATGGGTTATAGTGTTGAGAAAAGACTCCGCCCTACTTCACAGTTCCTCAAATCAATAGGTCTGAGTGAGCAGGATCTTCAAGCAGTGGCTGTGAACTTCCCAGCAATCTTGAGTAGAGATGTGAACAAACTTTTGGTACCCAATTATGCGTATCTAAAGAGACGAGGATTTCAAGAAAGACAGTTAGTTGCTTTGGTGGTTGGTTTTCCTCCTATATTGATCAAGAGCATTCAGAATTCATTAGAACCAAGATTCAAATTTTTAGTGGATGTGATGGGAAGACAAGTTGATGAAGTTGTTGATTATCCTTGTTTCTTTCACCATGGTCTCAAGAGAAGAATAGAGCCACGGTACAAACTTCTAAAGGAGAGGAATTTAAATTGTAGCTTGAGTGAAATGTTGGATTGCAACAAGAAGAAGTTTTTCATGAAGTTTGGTTTGTTAGAAGGACAAGCCTTGAGTAACTAG 1011 0.4085 MEITSSHNSCSSMMWFFKDKGFDDNSVQGIFRRCKRLQDVHQERASENWEYLRSIGIEERKLPSIVSKCPKILALDLYDKIMPTVECLRTLGTKPREVATAIAKFPHILSNSVEEKLCPLLAFFQALGIPEKHIGKMILLNPRLISYSIETKLTEIVNFLASLGLNKDGMIGKVIVKDPYIMGYSVEKRLRPTSQFLKSIGLSEQDLQAVAVNFPAILSRDVNKLLVPNYAYLKRRGFQERQLVALVVGFPPILIKSIQNSLEPRFKFLVDVMGRQVDEVVDYPCFFHHGLKRRIEPRYKLLKERNLNCSLSEMLDCNKKKFFMKFGLLEGQALSN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00651 336 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 28 58 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 63 94 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 244 276 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 98 330 - -
Vimu10g00651 336 Gene3D Transcription termination factor 3, mitochondrial 3 112 IPR038538 -
Vimu10g00651 336 Gene3D Transcription termination factor 3, mitochondrial 113 330 IPR038538 -
Vimu10g00651 336 PANTHER CGI-12 PROTEIN-RELATED 133 254 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 Pfam mTERF 112 322 IPR003690 GO:0003690|GO:0006355
Vimu10g00651 336 Pfam mTERF 6 168 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00651 mTERF 1.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00651 K15031 - gmx:100816929 616.305