Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00648 ATGGCGGTTCCGTTGATCTCGAAGAAGATCGTGAAGAAGCGAGTGAAGAAGTTCAAGCGCCCCCAAAGCGATCGCAAGATCTCCGTCAAGCCAAGCTGGCGCAGACCCAAGGGTATTGACTCTCGTGTCAGGAGGAAGTTCAAAGGATGCGTTTTGATGCCCAACATTGGTTACGGTTCAGACAAGAGAACTCGCCATTATCTTCCAAATGGTTTTAAGAAATTTGTTGTGCACAATGTGAAGGACCTTGAACTTCTTATGATGCATAATAGGACGTACTGTGCTGAGATTGCTCACAATGTGTCCACAAGGAAGAGGAAGGACATTGTTGAGAGAGCTGCTCAGCTTGATGTAGCTGTGACAAACAAAACTGCCAGACTGCGCAGCCAGGAAGATGAATAG 402 0.4701 MAVPLISKKIVKKRVKKFKRPQSDRKISVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKRTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVAVTNKTARLRSQEDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00648 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu10g00648 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu10g00648 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vimu10g00648 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Vimu10g00648 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00648 Vimu-Chr10 5549210 5550821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00648 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 83.459 4.43e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00648 K02912 - gmx:100499846 246.899