Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00620 ATGGCTGGCATAGGACAAACATTGTTGCTTGTTTCTTTATGTGGCACCTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGGGGACCTTACTATCTAATAGGTCGAGCCCTTGGTCCTGAAGTTGGAGTTAGCATTGGTCTATGCTTCTTCCTTGGAAATGCTGTTGCTGGAGCACTTTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTGCTGCTGGGATTTTTAGAGAGGCTGCCACGCATGTTAACGGGACTGCAGTTACACAACCAATAGAGAGTCCAAGTTCTCACGACTTGCAAATATATGGGATTGTTGTGACTATTTTGTTATGCTTTATTGTATTTGGAGGTGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTTTCAGTCATCTGCATATTTTTGGGAATTTTTGTGGCAAGGAAGGACCATCCCACAGAGGGAATTACTGGGCTGAATTCACAGACATTTAGAGATAATTGGAGTTCAGATTATCAAAAGACTAATAATGCTGGAATTCCACAAACTGATGGCTCGGTAACCTGGGATTTCAATTCATTGGTAGGCCTTTTTTTCCCTGCTGTGACGGGAATAATGGCAGGTTCTAACCGATCATCCTCTCTGAAAGATACTCAACGATCAATTCCTGTTGGAACTTTAGCAGCAACTCTTGCAACTACTTGTCTGTATTTTATTTCTTTGGTGCTGTTTGGCTCTGTTGCCAGCAGAGAGAAGCTTTTAACTGACAGGCTACTCACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGAATTATTCTTTCGACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCGCGTCTGCTTGCAGCGATAGCCAATGATGACATTTTACCTATTTTGAATTACTTTAAAGCTGCAGATGGCGGTGAACCACATGTTGCTACCCTTTTTACTGCTTTCTTGTGTATTGGATGTGTCATTATTGGGAATCTGGATCTCATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTACACTGGTGTCAACTTATCCTGCTTCCTTCTTGATCTACTAGATGCCCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTATGTCCCTTGTGGGAGCATTACTATGCATAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTATCTTTGGCCCTTGCAAGCCTCATATATAAGTACGTGAGCATTAAAGGAAAGGCTGGGGACTGGGGTGATGGTTTCAAAAGTGCCTATTTCCAACTAGCACTTCGTAGCCTTCGGTCCCTTGGAGCAAGCCAAGTTCACCCAAAGAATTGGTATCCAATTCCACTAATATTTTGCCGACCCTGGGGCAAACTGCCAGAAAACGTTCCCTGTCATCCCAAACTTGCAGATTTTGCAAACTGCATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGTGATTACCATGAACGTGCTGAAGATGCCAAAACTGCTTGTAAACAACTTAGCACCTACATTGATTACAAAAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCCAACATGTCTGAAGGCTTCCGTGGCATTATTCAGACAATGGGCCTGGGCAATCTCAAGCCAAACATTGTGGTGATGCGTTATCCAGAAATCTGGCGAAGGGAAAACTTGACAGAAATCCCTGCCACCTTCGTCGGGATAATCAATGATTGTATTGTTGCAAACAAAGCTGTGGTTATAGTTAAGGGTCTTGATGAATGGCCGAACGAGTACCAGAGGCAGTATGGTACGATTGATTTGTACTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTCTCTCAGCTCCTTCTTACCAAGGCGAGCTTTGAAAATTGCAAGATTCAGGTCTTTTGTATCGCAGAAGACGATGGAGATGCAGAGGGACTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCGGAAGTTTTTGTCATAACAATGAAATGGGATGCACAGGTGGATGGGGGTGGTGGATCTCCACAAGACGAGTCGTCGGAAGCATTTACTAGTGCTCAGCAGAGAATTGATGATTACTTAACCCAGATGAAGGTTAGAGCACAGAAAGAAGGTACTCCTCTAATGGCAGATGGTAAGTCTGTGGTTGTGAACGAGAAGCAGGTGGAGAAGTTTCTTTACACAACGCTAAAGCTCAATTCAATAATTCTGAGATATTCAAGAATGGCTGCTGTTGTATTGGTAAGTCTTCCTCCACCTCCACTGAGTCACCCAGCATACTTCTATATGGAGTACATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGTTATCGTAGAGACGTTGTAACTCTATTCACGTAG 2463 0.4312 MAGIGQTLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFREAATHVNGTAVTQPIESPSSHDLQIYGIVVTILLCFIVFGGVKMINRVAPAFLIPVLFSVICIFLGIFVARKDHPTEGITGLNSQTFRDNWSSDYQKTNNAGIPQTDGSVTWDFNSLVGLFFPAVTGIMAGSNRSSSLKDTQRSIPVGTLAATLATTCLYFISLVLFGSVASREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKAADGGEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSMSLVGALLCIVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFENCKIQVFCIAEDDGDAEGLKADVKKFLYDLRMQAEVFVITMKWDAQVDGGGGSPQDESSEAFTSAQQRIDDYLTQMKVRAQKEGTPLMADGKSVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00620 820 Pfam Solute carrier family 12 487 608 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vimu10g00620 820 Pfam Solute carrier family 12 619 819 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vimu10g00620 820 Gene3D Amino acid/polyamine transporter I 1 435 - -
Vimu10g00620 820 NCBIfam K-Cl cotransporter 1 820 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vimu10g00620 820 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 1 817 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vimu10g00620 820 FunFam Cation-chloride cotransporter 1 1 435 - -
Vimu10g00620 820 Pfam Amino acid permease 2 453 IPR004841 GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00620 1 820 Inorganic Solute Cotransporters AT1G30450 82.826 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00620 K14427 - gmx:100795205 1497.26