Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00613 ATGGTAGTAGGCATGGCGGAGGAAGTGGAAGAATCGAATAATGCAGTCAGAATATTCGTGGGAGGATTGGCGGAAACCGTCAGCATCGAAGACCTACGAAGCTTATTCTCCTCTCTTGGCTCCGTCCAAGCCGTTCAAACCATCCGAACCAAAGGTCGCAGCTTTGCCTACATTGATTTTCACTCCGACCCTAAATCCCTTTCTAAGCTCTTCAGCAAGGCAAGAATCAACAACTATCTTTTCATTTTTTTTATGTCTTTACCTAATTTTAACTTTCGATTGACATGGCAGTATAATGGGTGTCTGTGGAAGGGTGGAAGGCTTAGACTTGAGAAGGCCAAAGAAGACTATCTCACGCGGATGAAGAGAGAATGGGAGCATGACGCCCTTGATGATGCTACTCAGCCGCCTCCTAGTTCTCCTAAGGAAGCCACCACACATTCTTCCAAGTCAAATACCAAACATCTCAATATTTTCTTTCCCAGATTGAGAAAGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATACAGTTTCCAGAATATTAAAGTTCCTCCACTCCCTGTGCATTTTTGTGATTGTGAGGAGCATTGTAGTCCCTTTGTCACTGAAAGAGGGAAGCTATCTATTGATGGGGCAGCTGAAAGTGCTGGAATGAATGATGAAGAGATTGGCATAATGAATTCTGTGATGAACAAGCTACTTCAAAAAGAAAAGATTTCCAGTGTTGAGAGCCTTGGAAAGGAGAAGGATTTGTACAAATCACCTGATACTTTACAATCTGATGAAGCTGAAGATAGTGCAGCGGATGAAGACGACCTTATTATTAACATGGAGACGAAGAGAAATAAAACAGCTTTAATAGGGAACCAGGAGCTTGAAAGAATCCTGGAAAATCAGGAATCCTGGTTTAATAAAACAAAAATTGCTAAGGAAGAACACAAAAATAGTATGCCTGAAGTGGAGAGAAGGAATAATAGCAATCCCAACAAGAACAAGAAGAGGAAATCACTTTCCAAAATGGAAATGGAAAGTAATGCAGAAGTATCAACAACCCCTGGAGGCAAGGGTAATAAGCAGACTCATCCAAATAAGGTGGGATCTGGTGCACAGCGTACTGAGCCAGAAGATGGTTTTGAGGAATTGCCTAAAGTTTCATGGTCTCAAAAGTCTTCATGGAAAGAACTTCTTGGTGGCGGAGGTAATACTTCTTTCAGTGCTTCTATCATATTGCCAAAGTTGGACTGCAGTAAGAATCTACAAAGATCCGATGACCTGTGTGCACCTGTATCTACAATCAGTAAAACTGAAAACATGGAAAAAGAAAGAGAATTATGTAGCATCCCTACCATTACGCAAGTGATAAAAGAGCATGCTGATGCTCAACCTACCCATACACAAGTGATAAAAGAGCTTGCTGAAGCTCAACCTGCAAATAAAGAAATGATAGAAGATGTTACCAAAAATCAGCATAATGTGGCACCGAATAAGACAGGCAGAGGAGCTTCATGGCTGCAAAAACAATCCTGGACACAAATGGTTAGTGAGAATAGCAATTCATTTAGCATTGCACATATTCTGCCTGGTATTACTTTTCCAGAGCCAAAGGCCAAGGAGCCCATTGTGGTACCTGCCATTTCCAACCATTTCAAGCATAATGGTGTAGCTAAGGGTACTATTAATGAAGCTGTGAGTAATGACGGGTTTAAATCAAGGGAGACTATACAAGAAAAGAGTCAGCATATCAGTGGCAATGACGTTACTTTTGCTTCAGTAGTTGAGGAAAAGGTTGAAACAAGTCCCAGGGAAAAATCCCCTGAAAATATTGAAATAGGTGAAACGTGCTCATTTATGAGAAGTGCTGCATCTCTGAAGGAATGGGCAAAAGCTAAGGCCGCTATTAGTGGATCACTCAAAAGAAAAAGTGGTGAGAATTACATCAAGTCTGGCTCAGAACGGTCTGATTGGGACTCAGTCAGTGATATAGCCAGTTCAAATTGGTTATTGCATCAAAAATGTTTTGTAACCGTCATGGTTCAACACAACCGCGATTCCATAACCAGCCTAGCTAATTGCATAGACTTTCTTATTTTGGACCGACCAGAGGTTCCCACAGAGACGCTCATGGTGGCTGCTGAGTGTGATGGAGACTGCGGCTTGGGCGAAGGCTGGTGCTGGCAGCGGTTGGAGGAGATGCTGCCGGCTTCGACGCGGAGGGTTGCGGCCTTAGGTGATGTAGCGAGAAGAGAGGATTTGGGAGAAGCAACTGGAGCAGGTGATTTTGGTGTCGAAGGGGTTATGCAGATATTCGTGAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCCGACACCATTGATAACGTGAACAACACCTACATTGCGGTGTCATGGCAGTGGCGGTTGCGGTGCTGCAACTTCAAGTGTCTCTGTTGA 2451 0.4321 MVVGMAEEVEESNNAVRIFVGGLAETVSIEDLRSLFSSLGSVQAVQTIRTKGRSFAYIDFHSDPKSLSKLFSKARINNYLFIFFMSLPNFNFRLTWQYNGCLWKGGRLRLEKAKEDYLTRMKREWEHDALDDATQPPPSSPKEATTHSSKSNTKHLNIFFPRLRKVKSIPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFVTERGKLSIDGAAESAGMNDEEIGIMNSVMNKLLQKEKISSVESLGKEKDLYKSPDTLQSDEAEDSAADEDDLIINMETKRNKTALIGNQELERILENQESWFNKTKIAKEEHKNSMPEVERRNNSNPNKNKKRKSLSKMEMESNAEVSTTPGGKGNKQTHPNKVGSGAQRTEPEDGFEELPKVSWSQKSSWKELLGGGGNTSFSASIILPKLDCSKNLQRSDDLCAPVSTISKTENMEKERELCSIPTITQVIKEHADAQPTHTQVIKELAEAQPANKEMIEDVTKNQHNVAPNKTGRGASWLQKQSWTQMVSENSNSFSIAHILPGITFPEPKAKEPIVVPAISNHFKHNGVAKGTINEAVSNDGFKSRETIQEKSQHISGNDVTFASVVEEKVETSPREKSPENIEIGETCSFMRSAASLKEWAKAKAAISGSLKRKSGENYIKSGSERSDWDSVSDIASSNWLLHQKCFVTVMVQHNRDSITSLANCIDFLILDRPEVPTETLMVAAECDGDCGLGEGWCWQRLEEMLPASTRRVAALGDVARREDLGEATGAGDFGVEGVMQIFVKTLTGKTITLEVESSDTIDNVNNTYIAVSWQWRLRCCNFKCLC 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00613 816 MobiDBLite consensus disorder prediction 345 370 - -
Vimu10g00613 816 SUPERFAMILY RNA-binding domain, RBD 9 63 IPR035979 GO:0003676
Vimu10g00613 816 MobiDBLite consensus disorder prediction 312 388 - -
Vimu10g00613 816 FunFam Polyubiquitin-C 769 797 - -
Vimu10g00613 816 SUPERFAMILY Ubiquitin-like 761 797 IPR029071 -
Vimu10g00613 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 115 IPR000504 GO:0003723
Vimu10g00613 816 MobiDBLite consensus disorder prediction 253 277 - -
Vimu10g00613 816 MobiDBLite consensus disorder prediction 129 151 - -
Vimu10g00613 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 62 IPR000504 GO:0003723
Vimu10g00613 816 Gene3D - 3 119 IPR012677 -
Vimu10g00613 816 PANTHER TRANSCRIPTIONAL REGULATOR 11 75 - -
Vimu10g00613 816 SMART rrm1_1 17 85 IPR000504 GO:0003723
Vimu10g00613 816 Gene3D - 767 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00613 Vimu-Chr10 5264029 5270022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00613 769 794 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 4.19e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00613 - - vum:124830427 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00613 10 5264029 5270022 Vimu10g00613 10 5264029 5270022 ECH