Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00568 ATGTATCACACGTCTTTGTTTTTGAAGCCTGTTTGGAATATTTTATTATCCTGCCTCTCTGTTCGAATCTTCTATTCTGGTTTTACGGATCACAGTTGTTGTGCGTCTGCTAGTTTTAACAACTTTATCGATCATATTTTTCAGGATAACCCTTTGGGGAACAAGCCAAAAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCAATAATTGAAGAAGCGCCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACACTAAGTTACATAGCAAAGATACGACCTCTAGCTGAGCACCATGGCATATGTAGGATTGTTCCTCCGGCTTGCTGGGCTCCACCTTGTCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAATGTAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCCAGAACAGGCACATGTAGGAGGAAGCCTGCCAGTGCAGCTTCTCATGCTAAGAATGCTTCTGATTCTGAAGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGGCTTTCAGCAATATGCTGATTATTTTAAAGAATGCTATTTTGGGTTGAAAGATGCTGATAGAGACAGAACAGTTAGTGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGCATAATTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAATAACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCGCCCGACTGCCAGGTTCTGTTCTAAGCTACGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGTGTACCTGGAAGCCATGCACCAGCCTTGGAAAATGCAATGAGGAAACACTTGCCTGATTTATTTGAGGAACAACCACATCTACTAAATGAACTGGTTACCCAATTTTCTCCTTCTATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACGGTCCAGCATTCTGGGGAGTTTGTTATTACCTTTCCGAGGGCATATCATTCTGGCTTTAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGATTTACAGTTCACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGGTGTACGGGCCATTACAGAGCTAGCTCTTGGAAAGGAATCTCCGAAAAATTTGAAATGGAGGAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAATTAAGGCAAGGATAAAAATGGAAGATGAAAGGCTAGACTGTCTTCCAAATCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCTGCTGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGCAATGGAGAAAAGATTTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGGTTGAAGCATTAGAAGGAGAGTCACATGCTATTAAGGTGTGGGCAAATAAAAACTGTGGAATGGTTTCTGCCAATGCCAATGAGGTTTGCATAGATAAATCAGATGTTGAGAAAGATATCTACAAAACCAAGAATTGTGAAGAAATAGATAGCTTAACTGGCTGTGAAGGAACCAAGGATAGGTCAAATTTAAACACACCAAGTAGTCCTAATAGTCATATTACTTCTGATATAGTGCAGTTTGAGTCTCACCCTGTAACTTCTAGTGCAGCATATGACAGTATAGATAGTCATAACGACAATAAGAGTGATAAAAAATTTGTCACAGACAAGGAATATAAAATGGATCAGGATGGTTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAACCATGTGCTGGATATTGCTGATAACCATCACAGCGAAGGTATTTCAGTAGAGGAAAAAGTATGCTGTTCAGAGGCCAAAAAGGAAGAAGACGACATGGAACTTGGTGGTGAGGGTAACTTGTCAAACTCGACTTCTGTTCTAAACACAGATTTTTCGTCAAGTTCAATGGCCAATCACAATTATTGTGCATTTGATGGTGGAAAATTTGAGCTGGATCTGCAAACAGATTCTGGGAAGCTTCACAACAATCTATCCAAAACAGGAGCCATAGGCACCACAGATACTCAAATGGATTTGACAGATGAAAGCTGCTTGGTGCAGATGTTTGGTACTTCTGTCGAGCCTGTAAGTTTGGGATCTGTTGTTCATGGAAAGCTGTGGTGCAGTAAGCGTGCGATATATCCAAAGGGATTCAAGAGTAGAGTTCTCTTCTTTAGCATTCTTGATCCAACGATAATCTGTAGCTATATTTCTGAAGTCGTTGATGCTGGATTTCTTGGACCCCTTTTCAAGGTTACCATGGAAGATTGTCCAAATGAGGCTTTCACAGATACCTCATCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCAAGAGGCGGAGGAGTCTAGGTGAACTAGAACTTCCTAACATACAGCTCCTGAAAAGCATCAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGCCATCGAAGTTCAAGATCCCTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCCCCTTCATGCAGTGTTGTTGATAACTTGACGTACGGTTCCAGAAGCCCTTTCGGTGATATCAATACCAAAATTTTTGGTATCAATTTGATTAAGCGTAACTTTTTTGAAGAGATGAAACAAATACTACAAAGGGCAAGTCCTGATGAGTTAAGCACACTGCATAAGTTACTCAGCTCTGATGCATGGTACTGTGAGTGGAAAGTGACATTGATGACACTGATGGATGAGATCCGGAAAGCCTGTCAATGA 3240 0.4108 MYHTSLFLKPVWNILLSCLSVRIFYSGFTDHSCCASASFNNFIDHIFQDNPLGNKPKNSNALESSDSLRNRKISARWDPVGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWAPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMKKKCRGRKRKRRRLSRTGTCRRKPASAASHAKNASDSEEKFGFQSGSDFTLKGFQQYADYFKECYFGLKDADRDRTVSDSNHQKRWEPSEEEIEGEYWRIIEQPSDEVEVYYGADLETGALGSGFPKASSIITSDSAQYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENAMRKHLPDLFEEQPHLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVEIYSSQCRKTSLSHDKLLFGSALEGVRAITELALGKESPKNLKWRSVCGKDGDLTKAIKARIKMEDERLDCLPNHLKLLKMNSDFDLYTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCAMEKRFVLLRYTRNELTKLVEALEGESHAIKVWANKNCGMVSANANEVCIDKSDVEKDIYKTKNCEEIDSLTGCEGTKDRSNLNTPSSPNSHITSDIVQFESHPVTSSAAYDSIDSHNDNKSDKKFVTDKEYKMDQDGYLDLNLDVFSGENENHVLDIADNHHSEGISVEEKVCCSEAKKEEDDMELGGEGNLSNSTSVLNTDFSSSSMANHNYCAFDGGKFELDLQTDSGKLHNNLSKTGAIGTTDTQMDLTDESCLVQMFGTSVEPVSLGSVVHGKLWCSKRAIYPKGFKSRVLFFSILDPTIICSYISEVVDAGFLGPLFKVTMEDCPNEAFTDTSSDNCWESVLKRLHHEIKRRRSLGELELPNIQLLKSINGHRMFGFLLPSIIQAIEVQDPCHMCVEYWNHKVAPSCSVVDNLTYGSRSPFGDINTKIFGINLIKRNFFEEMKQILQRASPDELSTLHKLLSSDAWYCEWKVTLMTLMDEIRKACQ 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00568 1079 Pfam JmjC domain, hydroxylase 332 448 IPR003347 -
Vimu10g00568 1079 Pfam jmjN domain 91 124 IPR003349 -
Vimu10g00568 1079 Pfam F/Y rich C-terminus 907 995 IPR003889 GO:0005634
Vimu10g00568 1079 ProSiteProfiles FYR domain FYRN motif profile. 845 903 IPR003888 GO:0005634
Vimu10g00568 1079 ProSiteProfiles FYR domain FYRC motif profile. 905 995 IPR003889 GO:0005634
Vimu10g00568 1079 SUPERFAMILY Clavaminate synthase-like 271 480 - -
Vimu10g00568 1079 PANTHER LYSINE-SPECIFIC DEMETHYLASE 86 779 - -
Vimu10g00568 1079 Pfam C5HC2 zinc finger 554 606 IPR004198 -
Vimu10g00568 1079 MobiDBLite consensus disorder prediction 162 201 - -
Vimu10g00568 1079 ProSiteProfiles JmjC domain profile. 302 465 IPR003347 -
Vimu10g00568 1079 SMART cupin_9 302 465 IPR003347 -
Vimu10g00568 1079 SMART fyrn_3 859 903 IPR003888 GO:0005634
Vimu10g00568 1079 SMART fyrc_3 909 1001 IPR003889 GO:0005634
Vimu10g00568 1079 Pfam F/Y-rich N-terminus 856 900 IPR003888 GO:0005634
Vimu10g00568 1079 SMART JmjN_1 89 130 IPR003349 -
Vimu10g00568 1079 FunFam Putative lysine-specific demethylase JMJ16 851 989 - -
Vimu10g00568 1079 Gene3D Cupin 75 449 - -
Vimu10g00568 1079 ProSiteProfiles JmjN domain profile. 90 131 IPR003349 -
Vimu10g00568 1079 Gene3D - 849 989 - -
Vimu10g00568 1079 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00568 Vimu-Chr10 4656882 4664046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00568 98 1074 JUMONJI Transcription Factor Family AT4G20400 47.422 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu10g00568 JmjC 8.2e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00568 K11446 - gmx:100801775 1759.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00568 10 4656882 4664046 Vimu10g00568 10 4656882 4664046 ECH