Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00561 ATGGGGAACATTTATCTGGCACATTTGATGGTGATGGTGGTGGTGGTGCTTTTCCTGGGGGTGTTTTTACCCTGTTTGTGTCAAGGTGATTCAGACTATGATACCACTGCTGTGTATGTTGTTACCCTTAGACATGCTCCTGTTTCTCATTACTATGGTGAGTTGAGAAGAGAAGTTAATAGCTTCAAAGATGCTGCTCCTGCTCCAGGGAGAACCCAATTTAACAAACCAAGAAGGTATGACAATATTACTAAGACAGATAAGAGATATGGCTCTTACATTTCCCAAGTTCATGATTCTCTGTTGAAGAAAGTGTTAAACGGAGAGAAATATTTGAAGCTCTATAGCTACCATTACCTGATAAATGGATTCGCTGTGCTGGTTACCCAGAAACAGGCAGAGAAACTATCAAGGAGCAGTGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGGACTGCGACTACACACACGCCACAGTTTTTGGGTCTGCCACAGGGAGCATGGTTTCAAGAGGGAGGGTTTGAAACAGCTGGAGAAGGAGTTGTTATTGGGTTTGTTGACACTGGCATAGATCCAACACATCCTAGTTTTGGTGATAGTAAATCCAATCATCCATATCCTGTTCCTGGTCATTTTTCTGGCATCTGTGAGGTTACTCGCGACTTTCCATCTGGTTCTTGCAATAGGAAGCTTGTTGGGGCCCGCCACTTTGCTGCTTCAGCCATAACCAGAGGAATATTTAATTCAACTCAGGACTATGCTTCTCCCTTTGATGGTGATGGTCATGGCACGCATACAGCAGCTGTTGCAGCAGGAAACCATGGGATTCCAGTCATTGTTGCTGGACATCACTTTGGAAATGCTAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCATTATACAAGAGCTTTGGAGGATTTGCTGCAGATGTTGTTGCAGCAATTGACCAGGCAGCTCAGGATGGGGTTGACATAATAAGTTTGTCAATTACTCCTAATAGACGTCCTCCTGGTGTGGCAACTTTCTTCAATCCAATAGACATGGCTCTGCTTTCGGCTGTGAAGGCCGGTATTTTTGTCGTGCAAGCAGCAGGAAATACTGGACCATCACCAACAAGCATGTTCTCCTTCAGTCCATGGATCTTTACGGTTGGTGCTGCATCTCATGATCGGGTTTATAGCAACTCCATATTTCTTGGAAATAATGTGACCATACCTGGAGCTGGTCTTGCTCCTGGCACAGATGAAAGCAAACTTTATAAACTGATTCATGCACATCATGCATTGAGCAATGACACAACGGTTGCTGATGATATGTATGTTGGTGAGTGCCAAGATGCAAATAAGTTCAACAAGGATTTGATCAAGGGGAACCTCTTAATGTGCAGCTATTCAATTCGATTTGTGCTGGGACTCTCCACCATCAAAAGAGCCTCAGAAACAGCCAAAAATCTTAGTGCAGCTGGTGTTGTCTTCTATATGGATCCCTATGTGATTGGTTTTCAGCTTAACCCTGTCGCAATGAAAATGCCAAGCATAATAATTGCTTCCACTAATGATTCCAAGATTTTAATGCAATACTACAATTCTTCATTGGAAATAGATGCAGTTTCAAAGAAAATTGTTAAATTTGGGGCTGTTGCCAGTATCTGTGGTGGACTAAAAGCGAACTATGGCAGTGCTGCACCCAAGGTTATGTATTACTCTGCCAGAGGACCAGATCCAGAAGACAGTCTTCCTCATGAAGCAGACATTTTGAAACCCAACTTGTTAGCTCCTGGAAGTTTTATATGGGCTGCTTGGAGTTCTGGTGCCGCCGATTCCGTTGAATTCCTAGGTGAGAATTTTGCATTGATGTCTGGCACAAGCATGGCTGCTCCTCATGTTGCTGGTCTTGCTGCACTAATTAAGCAAAAGTTCCCGAGTTTTAGTCCTGCAGCCATTGGATCTGCACTTTCCACTACAGCTTCTCTGTATGACAAGAGTGGTGGGCCAATAATGGCTCAACGATCGTATGCCTCTCCCGAACTGAACGAGTCTCCAGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAATCCTGGTTTGATTTTTGATTCCGTTCCTTTGCCCTTTGAAGCTGTTGAGTTTATGTGGGGTTATGATGATTATATGTCATTTCTATGTGGCATCAATGGTTCAGCTCCTGTGGTGCTAAACTACACTGGTCAAGATTGTGGACTCTTCAATTCCACTGTGTATGGTCCTGATCTGAACCTGCCCTCAATCACTATATCAAAGCTGAACCAATCTAGAATAGTGCAGAGGACAGTCCAAAACACTGCTCAAAATGAATCATACAGTGTTGGTTGGACTGCTCCTTATGGAGTTTCATTGAAAGTGTCTCCAACTCACTTCAGTATTGGCAGTGGTGAGAAGCAGATATTGTCTGTGCTCTTGAATGCAACAGTTAACAGCTCTGTTTCCAGCTTTGGGAGAATTGGGCTGTTTGGGAATCAAGGTCATGTGCTAAACATTCCAATTTCAATCATGGTTAAAATCTCATCTAACACCACTACAAGTTAA 2595 0.4343 MGNIYLAHLMVMVVVVLFLGVFLPCLCQGDSDYDTTAVYVVTLRHAPVSHYYGELRREVNSFKDAAPAPGRTQFNKPRRYDNITKTDKRYGSYISQVHDSLLKKVLNGEKYLKLYSYHYLINGFAVLVTQKQAEKLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQEGGFETAGEGVVIGFVDTGIDPTHPSFGDSKSNHPYPVPGHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTAAVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPTSMFSFSPWIFTVGAASHDRVYSNSIFLGNNVTIPGAGLAPGTDESKLYKLIHAHHALSNDTTVADDMYVGECQDANKFNKDLIKGNLLMCSYSIRFVLGLSTIKRASETAKNLSAAGVVFYMDPYVIGFQLNPVAMKMPSIIIASTNDSKILMQYYNSSLEIDAVSKKIVKFGAVASICGGLKANYGSAAPKVMYYSARGPDPEDSLPHEADILKPNLLAPGSFIWAAWSSGAADSVEFLGENFALMSGTSMAAPHVAGLAALIKQKFPSFSPAAIGSALSTTASLYDKSGGPIMAQRSYASPELNESPATPFDMGSGFVNASGALNPGLIFDSVPLPFEAVEFMWGYDDYMSFLCGINGSAPVVLNYTGQDCGLFNSTVYGPDLNLPSITISKLNQSRIVQRTVQNTAQNESYSVGWTAPYGVSLKVSPTHFSIGSGEKQILSVLLNATVNSSVSSFGRIGLFGNQGHVLNIPISIMVKISSNTTTS 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00561 864 SUPERFAMILY Subtilisin-like 154 706 IPR036852 GO:0004252|GO:0006508
Vimu10g00561 864 Gene3D - 394 562 - -
Vimu10g00561 864 ProSitePatterns Serine proteases, subtilase family, serine active site. 625 635 IPR023828 -
Vimu10g00561 864 CDD PA_subtilisin_like 403 535 - -
Vimu10g00561 864 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 107 851 IPR045051 -
Vimu10g00561 864 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 26 152 IPR037045 -
Vimu10g00561 864 Pfam Subtilase family 179 664 IPR000209 GO:0006508|GO:0008236
Vimu10g00561 864 PRINTS Subtilisin serine protease family (S8) signature 179 198 IPR015500 -
Vimu10g00561 864 PRINTS Subtilisin serine protease family (S8) signature 259 272 IPR015500 -
Vimu10g00561 864 PRINTS Subtilisin serine protease family (S8) signature 624 640 IPR015500 -
Vimu10g00561 864 Pfam Peptidase inhibitor I9 38 154 IPR010259 -
Vimu10g00561 864 CDD Peptidases_S8_3 154 661 IPR034197 -
Vimu10g00561 864 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 184 195 IPR023827 -
Vimu10g00561 864 Gene3D Peptidase S8/S53 domain 181 710 IPR036852 GO:0004252|GO:0006508
Vimu10g00561 864 ProSiteProfiles Serine proteases, subtilase domain profile. 159 702 - -
Vimu10g00561 864 Gene3D - 731 856 - -
Vimu10g00561 864 Pfam Fibronectin type-III domain 760 853 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00561 Vimu-Chr10 4613861 4621383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00561 13 859 Subtilisin-like Serine Gene Family AT4G20430 67.056 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00561 - - gmx:100796456 1531.54