Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00556 ATGAGAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTCGTGCAAGAAATGGGTTGGCTCCTTCACAGAAACCGAGCGAAAGTTAGGCTGGGTCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCACGTGGCTTGTTGCCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTGGATATAGGAGAGCATACCACAGTTGAGTTAGCTTTGTTAAAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGCTAAAATTTGTGCCAGCTAATGCTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAACAGATTCATATTCAGACCTGATTCTGTTGGGCCTGCTGGGTTGACTCCCCTGCATGTTGCAGCAAGTATACATGGTTTGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGACTTGAGGCATGGAAAAGTACTCAGGACACTACAGGTTTGACCCCTTATGATCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAAAGGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGGTGCGACATTGTGGGGTATGCCAGCACAAGTTGGCGTACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTATGTATTCCAGCCATTCAGTTGGGAGTCATTGGAATATGGATCCATGTAA 966 0.44 MRTKLMEEKTQALYFVQEMGWLLHRNRAKVRLGPVAPLQDCFHFNRFTWLVAFSMDHDWCAVMKKLLNIIFEGTVDIGEHTTVELALLKMDLLHKAVKRNCRPMVELLLKFVPANASDGGDSKEKQVNKSPNRFIFRPDSVGPAGLTPLHVAASIHGLDNVLDALTDDPGLVGLEAWKSTQDTTGLTPYDHASLRGYYSYIQLVQRKISNTCKSEHVLNIPGTLVDSNIKQKQSDGHRSSKVSSLQTEKIETTAMVRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00556 321 Gene3D - 38 209 IPR036770 -
Vimu10g00556 321 SUPERFAMILY Ankyrin repeat 89 204 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00556 Vimu-Chr10 4589275 4599891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00556 11 320 SBP-box Gene Family AT2G47070 50.160 1.86e-98 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00556 - - vum:124847169 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00556 10 4589275 4599891 Vimu10g00556 10 4589275 4599891 ECH
Vimu7g01640 7 15252468 15258617 Vimu10g00556 10 4589275 4599891 PCT