Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00555 ATGGCATCTGATCTGAGTTCGGGGTTGTACAAGAAAACTTTTGTCTTTGGTTTGAAAGTGTGGGTACTAATGGGAATACTAGTTGGGTTATTCATCGTAATCATTCTTGTGGTGCTATCAATATGTCTCACTTTAAGAAAGAAGTTCAGAAGAGTCAATGGCAAGCTTCCACTCAGCCATGTGTTAGCTATTTCAGAAGAGATCAAAGAAATCAGAGTTGATCAAGTTTCAGCAAATAATCATCCACAGAATGGTACTTTTATGAGTGTGAATGACAAACTTGGTGAAGGGGATACTGAAAAGGTTTTGAACCAAACACAGAATGGGGACACTAGTAGTCAATCAGGGTCCTTTAATCATTTAGAAAAAGATGGTAATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGGGAATTGCTTCTTATGGGTCTTCTTTGCATCCTATAACCGCACCATCCCCTTTGTCTGGTCTGCCGGAATTCTCACAGCTCGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCTACAAACAGATTTTCAAAAGAAAATGTTATTGGGGAAGGTGGATATGGAATTGTTTATCGTGGTCAATTAATCAATGGGAGTCCTGTGGCTATCAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGAGTGGAGGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTAGTACGACTTTTGGGCTACTGCATTGAAGGCACTCATAGGTTGTTGATTTATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCATGGGGCCATGCGGCAGCATGGTTTTCTTACTTGGGATGCTCGGATAAAAATTCTCCTTGGAACAGCCAAAGCGCTGGCTTATTTGCACGAGGCAATTGAGCCAAAAGTTGTGCATAGAGATATTAAGTCGAGCAATATTCTAATTGATGAGGACTTTAATTCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCATATTACAACCAGAGTTATGGGTACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGCTAAATGAGAAGAGTGATGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATTACAGGAAGAGACCCTGTGGATTATAGCCGACCAGCAGCCGAGGTAAATTTGGTCGACTGGCTGAAGATGATGGTAGGTTTACGACGCTCAGAAGAGGTGTTGGATCCCAACATCGAGACCAGGCCATCGACAAGTGCCCTTAAACGAGCCCTCTTGACAGCTCTGAGGTGTGTTGATCCAGATGCTGAAAAAAGACCAAGAATGAGCCAAGTCGTCCGTATGCTTGAATCAGAGGAATATCCTATACCACGAGAGGATCGAAGACGCCGGAAGAGTCAGGCCGGAAACATGGAGGTGGAGACTCATTCTGATACAGATAAGAGTGACAATGCTGATTATAAGCCCAATGGAAGAAAGAACCAATGTGTGTAA 1506 0.427 MASDLSSGLYKKTFVFGLKVWVLMGILVGLFIVIILVVLSICLTLRKKFRRVNGKLPLSHVLAISEEIKEIRVDQVSANNHPQNGTFMSVNDKLGEGDTEKVLNQTQNGDTSSQSGSFNHLEKDGNGSQSGEESGAKGIASYGSSLHPITAPSPLSGLPEFSQLGWGHWFTLRDLELATNRFSKENVIGEGGYGIVYRGQLINGSPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNSKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGLRRSEEVLDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREDRRRRKSQAGNMEVETHSDTDKSDNADYKPNGRKNQCV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00555 501 MobiDBLite consensus disorder prediction 103 135 - -
Vimu10g00555 501 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00555 501 FunFam Putative receptor-like protein kinase 164 257 - -
Vimu10g00555 501 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00555 501 CDD STKc_IRAK 188 454 - -
Vimu10g00555 501 Gene3D Phosphorylase Kinase; domain 1 162 257 - -
Vimu10g00555 501 PANTHER OS01G0323000 PROTEIN 5 479 - -
Vimu10g00555 501 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00555 501 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Vimu10g00555 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vimu10g00555 501 SUPERFAMILY Protein kinase-like (PK-like) 166 463 IPR011009 -
Vimu10g00555 501 MobiDBLite consensus disorder prediction 103 139 - -
Vimu10g00555 501 MobiDBLite consensus disorder prediction 444 501 - -
Vimu10g00555 501 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Vimu10g00555 501 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Vimu10g00555 501 MobiDBLite consensus disorder prediction 444 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00555 Vimu-Chr10 4567180 4570937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00555 17 456 Trihelix Transcription Factor Family AT1G70460 39.551 1.75e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu10g00555 Pkinase 9.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00555 - - gmx:100818864 892.493