Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00547 ATGGTGACTTTAGCCCATGGGAGAAAGGAAGGGCAGGGAAAGAGACTTGGGAAATACGAATTGGGAAGAACACTTGGAGAAGGAAATTTTGGAAAGGTCAAGTTGGCAAGGGACACTAATTCTGGGAAGCTTTTTGCTGTTAAGATCCTTGAGAAGAACAAGATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAGATATCTACCTTGAAGCTTCTGAAGCACCCTAATGTCGTCAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTACATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTGAAGAAGCTGAAGGTAGGAAGATATTCCAACAGTTGATTGATGGTGTGAGTTTCTGCCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCTGGAGAATGTACTTGTCGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTTAGTGCTTTGCCTCAGCATTTTAGGGATGATGGGTTGCTTCATACTACTTGTGGAAGTCCCAACTATGTTGCTCCCGAGATTCTTGCTAATAAAGGCTATGATGGTGGAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTTACAGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTTTATCAAAAGATTTTTAAAGGAGACCTTCAGATACCAAGATGGCTTTCAGCTGGTGCTCGAAACATGATAAAAAGAATGCTTGATCCAAATCCTAAAACCCGGATAACAATGACTATGATCAAAGAAGATGAATGGTTCAAAGAAGGTTATATTCCTGCAAATCCAGAAGATGAAGAAGAGGGTGTGTTCATTGATGATGAAGCCTTTTCCATTCATAATGCGTCACTTGAATCAGATCAAGGTAGTCCAACATCACCAACACTCGTCAATGCATTTCAATTGATAGGGATGTCTTCAAGTCTAGATCTCTCTGGCCTTTTTGAGAAAGAGGATGTTACTGAGAGGAAGATAAGGTTTACATCCACTCATTCACCAAAAGATTTGGAGGAGAGGATAGAAGACATTGTAACAGGGATGAGATGTAGAGTTCAGAAGAAGAATGGGATGTTGAAAGTGACACAAGATATTAAAGCACAGAAATGTCTCGGTAGTCTTTCAGTGATAATAGAGGTATTTGAAATCAGTCCAACATTGTATGTGGTAGAGTTGAGTAAGTGTTGTGGAGATGCTTCTGCATATAGAGAGTTATGCCAGAAGTTGTCAAATGAATTGGGTTTTGACCCAAACCAACAGTTAGAGAGCTCAGAAATGATAGGCCTACTAAGAGAAAATAATTTGGAAGCTATAAATGTAGATGTGTGA 1386 0.3911 MVTLAHGRKEGQGKRLGKYELGRTLGEGNFGKVKLARDTNSGKLFAVKILEKNKIIDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLEEAEGRKIFQQLIDGVSFCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRDDGLLHTTCGSPNYVAPEILANKGYDGGTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDLQIPRWLSAGARNMIKRMLDPNPKTRITMTMIKEDEWFKEGYIPANPEDEEEGVFIDDEAFSIHNASLESDQGSPTSPTLVNAFQLIGMSSSLDLSGLFEKEDVTERKIRFTSTHSPKDLEERIEDIVTGMRCRVQKKNGMLKVTQDIKAQKCLGSLSVIIEVFEISPTLYVVELSKCCGDASAYRELCQKLSNELGFDPNQQLESSEMIGLLRENNLEAINVDV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00547 461 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vimu10g00547 461 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00547 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vimu10g00547 461 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00547 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 421 - -
Vimu10g00547 461 CDD CIPK_C 318 429 - -
Vimu10g00547 461 FunFam Non-specific serine/threonine protein kinase 312 434 - -
Vimu10g00547 461 SUPERFAMILY Protein kinase-like (PK-like) 15 319 IPR011009 -
Vimu10g00547 461 Pfam NAF domain 314 373 IPR004041 GO:0007165
Vimu10g00547 461 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vimu10g00547 461 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00547 461 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Vimu10g00547 461 Gene3D Transferase(Phosphotransferase) domain 1 11 315 - -
Vimu10g00547 461 Gene3D Kinase associated domain 1, KA1 316 433 - -
Vimu10g00547 461 FunFam Non-specific serine/threonine protein kinase 12 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00547 Vimu-Chr10 4497057 4501940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00547 82 439 CBL-interacting serine-threonine protein kinases AT3G17510 68.524 1.02e-167 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g00547 Pkinase 9.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00547 K07198 - gmx:100815660 764.992