Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00542 ATGGAAGAAAAATCTTCCTTAAAAAATTTGCTGAAAGATGAAGAAAGGCCTTACGATTCTAATACAACAGGAAACGGAACCGATGAACCCTCCCTTCATAACACTATGGGATCCAGTGTTCTCTCTTTGAGCCTGAATAACACTGGACAGCCCTTGAACCAAATGGGCATGCTGAGAATCAAACTTGAAGAAGCTAAGAAAGAGAATGAAATCCTAAAGGCCATGCTAACCCAGGTTAATGAACACTGCACTGTTCTTCAGAATCGAATACTTTTTGAGATGCAGCAACATCAACTCTCTTCATCAGTTATCAATAAAAACAATAATCATGAGTCGCAGGGAAAAATACAAGATGTGGAGAAACCAATGCTACACACTCGGCAGTTTTTGAATATTGGTGACTGTTCTTCACTTTCAGAGGGTTATACAGAAAAGATTGAAAAGAAAATATTAGGCAGAAGCCTGGCATGTGAGAAGAACAATATCGTTGAAGGTGAAATGAACACAAAAATAGCATTGCATGAAGCAAAATGCATAGAAGATCAAGCATCTGAGGTTACTTGCAGAAGAGCTAAAGTATCCATAAGAGCACGATCAGATTTTTCTTTGATGGGAGATGGGTGCCAATGGAGAAAGTACGGACAAAAGACTGCCAAAGGCAACCCTTGTCCCCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAGAGGTGTTTTAAGGATGAGACTGTTCTCATCACAACCTATGAAGGAAGCCATAACCACCCACTCCCACTGGCAGCCAGATCTTTGGCAAGCTCAACATCAGCAGCATTGAACATGTTCCTATCTGGCTCACTCACGAGTTCTGTTGGCACCACCACTCTACCAAATGCACCCCTCTTCTCTTCATCACTGTCTTCTGTTTCCCCAACTGCAGTAGCCACTTTCTCCCATAGTGCAACATGTCCCACAGTAACGCTGGACTTGACTCAGACCAACAACAACAATAACTATCTCCAGTTCCAAAGAGCCACCACTTCACACCCTTTCTTCCCTCTCCCACTGCATGACCACCCTCATCACGGGTTGCCCTTATTGTGTTCCAAAGTTCCAACCTTTTTAAGCCCAGACAAAAACCTTGCATTGGTAGATGTTGTCAGTCAGGCCATAACCAAAGACCCTTCTCTCAAGGCAGCACTTTTTTCAGCCATTTCTTCACTCACCGGAGATTCTCAGAAGAACAGCAATAACCACCACCAACACAGCAAGAGTAGCAGTGGCTATGATCCTTGTTCTAAGATGCCTGCAATATTACCACCTCATCAGCCTTGCTCTACTGAGTTGATATAG 1353 0.4375 MEEKSSLKNLLKDEERPYDSNTTGNGTDEPSLHNTMGSSVLSLSLNNTGQPLNQMGMLRIKLEEAKKENEILKAMLTQVNEHCTVLQNRILFEMQQHQLSSSVINKNNNHESQGKIQDVEKPMLHTRQFLNIGDCSSLSEGYTEKIEKKILGRSLACEKNNIVEGEMNTKIALHEAKCIEDQASEVTCRRAKVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGSHNHPLPLAARSLASSTSAALNMFLSGSLTSSVGTTTLPNAPLFSSSLSSVSPTAVATFSHSATCPTVTLDLTQTNNNNNYLQFQRATTSHPFFPLPLHDHPHHGLPLLCSKVPTFLSPDKNLALVDVVSQAITKDPSLKAALFSAISSLTGDSQKNSNNHHQHSKSSSGYDPCSKMPAILPPHQPCSTELI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00542 450 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00542 450 MobiDBLite consensus disorder prediction 1 37 - -
Vimu10g00542 450 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00542 450 MobiDBLite consensus disorder prediction 20 37 - -
Vimu10g00542 450 Gene3D WRKY domain 189 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00542 450 MobiDBLite consensus disorder prediction 410 450 - -
Vimu10g00542 450 SUPERFAMILY WRKY DNA-binding domain 197 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00542 450 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 52 421 IPR044810 GO:0003700
Vimu10g00542 450 Coils Coil 55 82 - -
Vimu10g00542 450 SMART WRKY_cls 204 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00542 450 MobiDBLite consensus disorder prediction 1 19 - -
Vimu10g00542 450 MobiDBLite consensus disorder prediction 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00542 Vimu-Chr10 4429587 4434148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00542 58 333 WRKY Transcription Factor Family AT4G04450 41.139 8.34e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g00542 WRKY 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00542 - - gmx:100816719 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00542 10 4429587 4434148 Vimu7g01595 7 14978007 14981091 PCT