Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00535 ATGGTTGGTCACGCCGCAGGTTACAGGAAGTCCGAGGTTTCCCTTCTAGAATCTTCTCCCTCTCCTGTCGAGAAACCTGAAGGAGTTTGTTCCAACATGGATGAACACCACCTGGTCCAACCCAATATGAATGACTCCTCAACCAACAAGTACGTTGCCAATAACTCTTTTGCTGATATGCTATGGATGAAGGATAAAAGAGTGGTTTTGTTTGTGTTAGTAAAAGGGTTTGTTAGTAAAAGGGTTTCCGGGTATTGTTTGGTGCTGGAGATTTGTGTGATTGGAAAAAGCAACAGTTGTAACCCTACCGATGATTTGAGAGAACTTTTTAATTGGACCCATCTTCTGGATTGGTTAAGTTATTGTGCTAAGAAAGCTTTGGGGGTTTCATTTGGGTCAGTGCCAGCATCTGGACTTAATGCAGTGATTCCTAGTACAAACCAGCTTACCATCTTCTACAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAATCTACTGAAGTGAAGAAGATTGGTACCCAATCTACCCTCATTTCACCTGTTCCCACAAGGCCTTCTTCTCCACATGCAATCACCAACAATATTGCTACCTCACAGACGAATTCCATCTGCAGGCTGCAAGAATTTCCAATAGCTCGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGATAGGTACTATCTACCTGCCATGCTGGGTAGCAAAGCTCCTTATCCTTCCTCATCAACCACTAAAGTGGCTGATAACATAGAGAACAACTTCTGTGCTGACAATGCCCCAGAACTGATTTCCTTGAACCGAGCAGAGGAGGAATTTCATCCGACTGTCTCTACCTCTTGA 894 0.4407 MVGHAAGYRKSEVSLLESSPSPVEKPEGVCSNMDEHHLVQPNMNDSSTNKYVANNSFADMLWMKDKRVVLFVLVKGFVSKRVSGYCLVLEICVIGKSNSCNPTDDLRELFNWTHLLDWLSYCAKKALGVSFGSVPASGLNAVIPSTNQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEVKKIGTQSTLISPVPTRPSSPHAITNNIATSQTNSICRLQEFPIARRHSLQRFLEKRRDRYYLPAMLGSKAPYPSSSTTKVADNIENNFCADNAPELISLNRAEEEFHPTVSTS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00535 297 Pfam Jas motif 226 243 IPR018467 -
Vimu10g00535 297 ProSiteProfiles Tify domain profile. 142 177 IPR010399 -
Vimu10g00535 297 SMART tify_2 142 177 IPR010399 -
Vimu10g00535 297 Pfam tify domain 144 176 IPR010399 -
Vimu10g00535 297 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 130 265 IPR040390 -
Vimu10g00535 297 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00535 Vimu-Chr10 4314763 4318306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00535 147 264 Tify Gene Family AT5G20900 48.413 5.93e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu10g00535 tify 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00535 K13464 - gmx:100306045 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01573 7 14840769 14841519 Vimu10g00535 10 4314763 4318306 PCT