Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00533 ATGGCGCTTTCTTCACCCAAGCACTTATCTCCAACACTCTTCTTCTTCCTTTTGGTTTTGCCGACTTTGTTCAGCAGCAGCAACCCCGTGGGATTCGAGTTTCTGAATGTTTCGCCTTCTGAATTCGCGGGGACAGTGAAAACTGTGGTTGATGTGTTGCAAGATGTAACCTCTATTCTCTCTGAGTTCGGTTCTGACTTCGGGGACTCGCTTCTTTCTAACGCCGTCTCTGATTGTCTAGATTTGCTTGACCTCTCCTCTGATGAACTTGATTGGTCTGTCACCGCTACACAGACTCCCCAAGGGAAGCATAACAGCACAGGAAACCAAAGTTCGGATTTGAGGACATGGCTGAGTGCTGCACTTGCGAACCAAGACACATGCATGGACGGATTCGACGGCACCAACGGCGTTGTGAAGGGTTTAGTGTCCACAGGGCTTGGCCAAGTGATGTCGTTGCTGCAACAACTTCTTACACAGGTGAACCCCGTTTCGAACCAATTCCCTTTCTCTTCCACAGGGGAACAGTTTCCGTCGTGGGTTAAACCAGGGGACAGGAAGCTGCTCCAGTCAAATGGGGTGGCCGTGGATGCGGTGGTTTCCGCCGATGGCACCGGGGACTTCACCAAAATCAAGGATGCAGTCTTGGCGGCGCCTAATTACAGCATGAAACGCTACGTGATATTCGTGAAGAGAGGGGTTTACCATGAGAACGTTGAGATTAAAAAGAAGAAGTGGAACCTCATGATGATCGGAGAAGGCATGAATGTTACTGTTATCACCGGTAACAGGAGCTTCGTCGACGGTTGGACAACGTTCCGGTCAGCAACTTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGAGCAGCGAAGCACCAAGCGGTGGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTCTGGTTACCAAGACAGCCTCTATACTCACACCATGCGCCAATTCTACAGAGAATGCAGAATAAGCGGCACTGTAGATTTCATATTTGGTGATGGCACTGTGATTTTCCAAAACTGCCTCATAGAGGTAAAAAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGAAGGAAAACCCCTGACGAACCAACAGGTTTCTCAATCCAGTTTTGCAACATTTCTGCTGATTCTGAGCTTCTGAACTCTGTGAACTCCACCCAGACATACCTTGGCAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTTACATGAGTGATGTGTTGAGCCCAGAAGGGTGGTTGGAGTGGGATGGAGACTTTGCCTTGGACACATTGTACTATGGAGAGTACTTGAATTATGGAGCTGGTGCTGGAGTTGGTAATCGAGTGAAATGGCCAGGTTACCATGTCATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTGTCACAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGTGTAGCATTCACAGCAGGATTGGAAGAATGA 1533 0.4781 MALSSPKHLSPTLFFFLLVLPTLFSSSNPVGFEFLNVSPSEFAGTVKTVVDVLQDVTSILSEFGSDFGDSLLSNAVSDCLDLLDLSSDELDWSVTATQTPQGKHNSTGNQSSDLRTWLSAALANQDTCMDGFDGTNGVVKGLVSTGLGQVMSLLQQLLTQVNPVSNQFPFSSTGEQFPSWVKPGDRKLLQSNGVAVDAVVSADGTGDFTKIKDAVLAAPNYSMKRYVIFVKRGVYHENVEIKKKKWNLMMIGEGMNVTVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGAAKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECRISGTVDFIFGDGTVIFQNCLIEVKKGLPNQKNTITAQGRKTPDEPTGFSIQFCNISADSELLNSVNSTQTYLGRPWKQYSRTVFMQSYMSDVLSPEGWLEWDGDFALDTLYYGEYLNYGAGAGVGNRVKWPGYHVMNDSSQASNFTVSQFIEGNLWLPSTGVAFTAGLEE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00533 510 SUPERFAMILY Pectin lyase-like 194 507 IPR011050 -
Vimu10g00533 510 Pfam Pectinesterase 197 494 IPR000070 GO:0030599|GO:0042545
Vimu10g00533 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 154 IPR035513 -
Vimu10g00533 510 FunFam Pectinesterase 191 508 - -
Vimu10g00533 510 PANTHER PECTINESTERASE 50 498 - -
Vimu10g00533 510 Pfam Plant invertase/pectin methylesterase inhibitor 69 143 IPR006501 GO:0004857
Vimu10g00533 510 SMART PMEI_2 24 160 IPR006501 GO:0004857
Vimu10g00533 510 Gene3D - 192 508 IPR012334 -
Vimu10g00533 510 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Vimu10g00533 510 CDD PMEI-like_4 9 165 - -
Vimu10g00533 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 164 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00533 Vimu-Chr10 4274970 4279544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00533 7 508 Carbohydrate Esterase AT3G43270 63.340 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00533 K01051 - gmx:100801813 833.558