Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00532 ATGGCTGTTTTCTGGACAAAACAACTCGTTCCAATTCCATTTGCCACTTTCATCTTCATCTTCTTCTTCTTTGCTTCATGTGATTTGGCGATAATCCACACCCTCAAAGTTTCTCCTTCCGAATTCGTAAGCTCCGTGAGAAAAGTACGTGATGTTTTGCGAAACGTTACCTCCACTCTCAAATCTGAGTTCAGCAATGTCAAGAGTGAGTTTCCTCGTTCTGATGCCGTTGTCGCATGTCTTGAGTTGTTGGAATTGTCAGATGATGAACTGATCTGGTCCATTTCCACAGTTGAAAGTCCCCAAGGGAAGCATAACAGTACTGGGAATCTGAGCTCTGATTTGAGGACATGGCTAAGTGGTGTACTTGCGAACACAGACACGTGCATGGATGGTTTTGAACATACGGGGGGGAATGTGAAGGATCTGATATACGATGAAATTAAGGAAGCGACGTTGTTGCTCCAAAAGCTGGTGAACCAGGTTGGTTCGAATTCTTTCATAATGGACGAAGTTCCTGCATTGGTTGAACCACTGCTGCAGAGCAAAACGATGCCTCCAGATGCCGTTGTTGCTGCTGATGGGAGTTGTAACTTTACTACGGTGATGGACGCTGTGAATGCAGCTCCTGAATATAGCATGAGACGCTTTGTGATACACATAAAGAAGGGCTTGTACACGGAGACAGTTGAGATTACGAAGAGAAAATGGAACATTGTGATGATTGGAGAGGGCATGGATGATACTGTTATCTCCGGTAACCTCAGCCGTACTGTAAATTTAACCACATACAGAACTGCTACCTTTGCTGTGAATGGGAGAGGATTCATGGCAACAGACATTTCCTTCAGGAACACTGCAGGACCTGAAAGAAACCAGTCTGTTGCACTGAGATCAAACTCTGACCTTTCTGTGTTTCTCCGATGTGGGATTTTTGGCTACCAAGACAGCCTCTATGCCCACTCCTTGCGCCAATTTTACAGAGAATGCAAAATCAGCGGTACTGTGGATTTCATATTTGGACATGCCAGTGCAGTGTTCCAGAACTGCACAATACTGGTGAAGAAAGGGTTAGATAAACAGCAGAACACAATCACAGCTCAAGGAGAAACGTGCCCTCATGGATCATCTGGCTTCTCCATCCAATTCTGCAACATTTCAGCAGACCATGACCTTCTGCCCTCAGTTAACACCACCTCAACGTACCTTGGAAGACCGTGGAAGAATTATTCTAGAGCTGTTTTCATGCAGTCTTACATAAGTGAGGTGTTAAGCCCGAAAGGGTGGCTAGAGTGGGAAGGATCACCATTGTATTTGGACACTTTGTACTTTGGAGAGTACAAGAATTATGGACCAGGAGCTAGGGTTGATAACAGAGTGAAATGGCCAGGGTACCATGTCATAAATGATTCTAGCCAGGCTTATAACTTCACTGTGGCCAATCTCCTTTTGGGAGATCTTTGGTTACCTTCAACTGGTGTAACATACACTCCTGGATTTGGTAACTGA 1509 0.4473 MAVFWTKQLVPIPFATFIFIFFFFASCDLAIIHTLKVSPSEFVSSVRKVRDVLRNVTSTLKSEFSNVKSEFPRSDAVVACLELLELSDDELIWSISTVESPQGKHNSTGNLSSDLRTWLSGVLANTDTCMDGFEHTGGNVKDLIYDEIKEATLLLQKLVNQVGSNSFIMDEVPALVEPLLQSKTMPPDAVVAADGSCNFTTVMDAVNAAPEYSMRRFVIHIKKGLYTETVEITKRKWNIVMIGEGMDDTVISGNLSRTVNLTTYRTATFAVNGRGFMATDISFRNTAGPERNQSVALRSNSDLSVFLRCGIFGYQDSLYAHSLRQFYRECKISGTVDFIFGHASAVFQNCTILVKKGLDKQQNTITAQGETCPHGSSGFSIQFCNISADHDLLPSVNTTSTYLGRPWKNYSRAVFMQSYISEVLSPKGWLEWEGSPLYLDTLYFGEYKNYGPGARVDNRVKWPGYHVINDSSQAYNFTVANLLLGDLWLPSTGVTYTPGFGN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00532 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 152 IPR035513 -
Vimu10g00532 502 CDD PMEI-like_4 26 166 - -
Vimu10g00532 502 Gene3D - 186 501 IPR012334 -
Vimu10g00532 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 162 IPR035513 -
Vimu10g00532 502 PANTHER PECTINESTERASE 50 490 - -
Vimu10g00532 502 SUPERFAMILY Pectin lyase-like 184 499 IPR011050 -
Vimu10g00532 502 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vimu10g00532 502 SMART PMEI_2 18 169 IPR006501 GO:0004857
Vimu10g00532 502 FunFam Pectinesterase 182 500 - -
Vimu10g00532 502 ProSitePatterns Pectinesterase signature 2. 332 341 IPR033131 -
Vimu10g00532 502 Pfam Pectinesterase 188 485 IPR000070 GO:0030599|GO:0042545
Vimu10g00532 502 Pfam Plant invertase/pectin methylesterase inhibitor 49 142 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00532 Vimu-Chr10 4262213 4263952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00532 24 500 Carbohydrate Esterase AT3G43270 52.305 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00532 K01051 - gmx:100798620 689.878