Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00530 ATGGCTCATTCACCTCATAAACTCTTTTTTCTTCTCCTTGCAATCTTCTACTCACACACTTCTGCTGTTAACTCCTACAATGCTTCCACAACACTTCAATCCAATCTCTCTTCCTTAAGATCTTTCTGCACAAACACCCCATATCCAGAAGTTTGTTTCAATTCATTGAAGCTATCCATCTCAATAAACATAAGTCCAAACATTATCAGCTACCTCCTTCAGTCACTCGAAGTAGCAATATCTGAAACCACAAAGCTCTCCGACATCTTCCACAATGTTGGAAACTCAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAGGACTGCCGAGAACTCCACCAATCCACATTGGCTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCTCCAACTCCATGAGCATAGTTGATGCTAGAGCCTACCTCAGTGCAGCTGTCACCAACAAGAACACATGCTTGGAAGGCCTAGATTCTGCTTGTGGCACCATGAAGCCAGCTCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTATGCTACCGAAGCCTGAGACGGGGACTCCCGGTGACCAGAAGAATGACCAGCATTTGATGAAGGCTCCAAAGTGGTTATCAAGCCGAAAGCAAGGAACTTTTCAAGATAGGGAAGAGTATAACCCAAATGAAGTGCTAGTTGTGTCTGCAGATGGAAGTGGGAACTTTACCACCATCACTGAAGCCATCAATTTTGCTCCAAGTAACAGCATGGAAAAGATAGTGATCTATGTCAAAGAAGGGATTTATGAGGAAAACGTGGAAATCCCAAGCTATAAGACCAACATTGTGATGCAAGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCTCGTGATATTGCAATTGAGAACAGTGCAGGGCCAGAGAAGCACCAAGCAGTGGCATTGAGGGTAAATGCAGACTTAACTGCATTTTACAGGTGTGCAATTAATGGCTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTTTACAGAGAGTGTGACATTTCTGGGACCGTAGATTTCATATTTGGAAATGCAGCAGTGATTCTACAAGATTGTAACATCATATCCAGAAAGCCCTTGCCTGGGCAATTTACTGTTATCACCGCACAATCCAGAGATAGCCCTGATGAGGACACAGGCATCTCAATCCAGAACTGCTCAGTCATAGCTACCCCTGATCTGTATTCCAACTCTTGCAGTTTCAAGAGCTACCTTGGGAGGCCATGGAAGAACTATTCTCGCACTGTTTACCTGGAGTCTTACATTGATAACTTCATTGATCCAAAGGGTTGGATAGAATGGAATAATGATAACAAAAGATCGGACACATTGTACTATGGAGAATACGACAACTATGGACCCGGTTCCAACACAGATAGTCGTGTTCAATGGTTAGGCTACCATTTGATGGATTATGGTGATGCATATAATTTCACAGTTTCGCAGTTCATCAATGCAGATGATTGGCTTGATACTACTTTGGTACCTTATGATAACGGGATTTGA 1620 0.429 MAHSPHKLFFLLLAIFYSHTSAVNSYNASTTLQSNLSSLRSFCTNTPYPEVCFNSLKLSISINISPNIISYLLQSLEVAISETTKLSDIFHNVGNSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSMSIVDARAYLSAAVTNKNTCLEGLDSACGTMKPALVKSVINTYKHVSNSLSMLPKPETGTPGDQKNDQHLMKAPKWLSSRKQGTFQDREEYNPNEVLVVSADGSGNFTTITEAINFAPSNSMEKIVIYVKEGIYEENVEIPSYKTNIVMQGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTAFYRCAINGYQDTLYVHSFRQFYRECDISGTVDFIFGNAAVILQDCNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSVIATPDLYSNSCSFKSYLGRPWKNYSRTVYLESYIDNFIDPKGWIEWNNDNKRSDTLYYGEYDNYGPGSNTDSRVQWLGYHLMDYGDAYNFTVSQFINADDWLDTTLVPYDNGI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00530 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Vimu10g00530 539 Pfam Pectinesterase 229 525 IPR000070 GO:0030599|GO:0042545
Vimu10g00530 539 Gene3D - 223 539 IPR012334 -
Vimu10g00530 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
Vimu10g00530 539 PANTHER PECTINESTERASE 16 529 - -
Vimu10g00530 539 FunFam Pectinesterase 35 187 - -
Vimu10g00530 539 SMART PMEI_2 34 184 IPR006501 GO:0004857
Vimu10g00530 539 SUPERFAMILY Pectin lyase-like 226 537 IPR011050 -
Vimu10g00530 539 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Vimu10g00530 539 NCBIfam pectinesterase inhibitor domain 9 185 IPR006501 GO:0004857
Vimu10g00530 539 CDD PMEI-like_3 41 184 - -
Vimu10g00530 539 FunFam Pectinesterase 222 539 - -
Vimu10g00530 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00530 Vimu-Chr10 4246900 4248934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00530 20 539 Carbohydrate Esterase AT2G26440 62.477 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00530 - - gmx:100776969 909.057