Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00529 ATGGCTCATTCATCTCATAAACTCTTCTTTCTTCTCCTTGCAATCTTCTACTCACACACTTCTGCTGTCAACTCCTACAATGCTTCCACAACACTTCAGTCCAATCTCTCTTCCTTAAGATCTTTCTGCATAACCACCCCATATCCACAAGTTTGTTTCAATTCATTATCCATCTCAATAAACATAAGCCCGAGCATTAACAGCTACCTCGTTCAGTCACTCGAAGTAGCAATATCTGAAACCACAAAGCTCTCCAATATCTTCCAAAATGTTGGACACTCAAACATTATAGAGAAGCAAAGAGGAGCAGTTCAGGACTGCCGAGAACTCCACCAATCCACATTGGCTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCTCCAACTCCATGAGCATAGTTGATGCAAGAGCCTACCTCAGTGCAGCTGTCACCAACAAGAATACATGCTTGGAAGGCCTAGATTCTGCTTCTGGCCCCATGAAGCCAGCTCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTGTGCTACAGAAGTCTGAAACGGGGACTCCCGGAGACCAGAAGAATGACCAGCCTTTGATGAATGCTCCAAAGTGGTTATCAAGCCGAAATCAAGGAACTTTTCAAGATATGGAAGAGTATAACCCAAATGAAGTGCTAGTTGTGTCTGCAGATGGAAGTGGGAACTTTACCACCATCACTGAAGCCATCAACTTTGCTCCAAGTAACAGCACGGATAAGACACTGATCCATGTCAAAAAAGGGACTTATGAGGAAAACGTGGAAATCCCAAGCTATAAGACCAACATTGTGATGCAAGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCTTTGGCTGGACCACTTTCAGATCTGCAACTCTAGGTGAACCCTTTCTACCCCTTTCTGATTTTTCTGCAATTAGTGACTTCTCATGCACTGGTTACCTCTTGGCACGAACGGTTTCTGGAGATGGTTTTCTTGCTCGTGATATTGCAATTGAGAACAGTGCAGGACGAAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTTTACAGGTGTAAAATTAATGGTTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTTTACAGAGAGTGTGACATTTCTGGGACAATAGATTTCATATTTGGAAATGCAGCAGTGATTCTACAAGATTGTAACATCATATCCAGAAAGCCTTTGCCTGGGCAATTCACTGTTATCACTGCACAATCCAGAGATAGCCCTGATGTGGACACAGGCATCTCAATTCAGAACTGCTCAATCATAGCTACCCCTGATCTGTATTCCAACTCTAGCAGTTTCAAGAGCTACCTTGGGAGGCCATGGAGGAACTATTCTCGCACCGTTTACCTTGAGTCCTTCATTGATGCCTTCATTGACCCAAAGGGTTGGATAGAATGGAATAATGATAACAAAAGATCGGACACATTGTACTATGGAGAATACGACAACTATGGACCCGGTTCCACCACTGATAGTCGTGTACAATGGTTAGGCTACCATTTGATGGATTATGGTGATGCATACAATTTCACAGTTTCGCAGTTCATCAATGCAGATGATTGGCTTGATACTACTTTGGTACCTTATGATAACGGGGTTTGA 1680 0.4292 MAHSSHKLFFLLLAIFYSHTSAVNSYNASTTLQSNLSSLRSFCITTPYPQVCFNSLSISINISPSINSYLVQSLEVAISETTKLSNIFQNVGHSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSMSIVDARAYLSAAVTNKNTCLEGLDSASGPMKPALVKSVINTYKHVSNSLSVLQKSETGTPGDQKNDQPLMNAPKWLSSRNQGTFQDMEEYNPNEVLVVSADGSGNFTTITEAINFAPSNSTDKTLIHVKKGTYEENVEIPSYKTNIVMQGDGSDVTVITGNRSFGWTTFRSATLGEPFLPLSDFSAISDFSCTGYLLARTVSGDGFLARDIAIENSAGRKHQAVALRVNADLTAFYRCKINGYQDTLYVHSFRQFYRECDISGTIDFIFGNAAVILQDCNIISRKPLPGQFTVITAQSRDSPDVDTGISIQNCSIIATPDLYSNSSSFKSYLGRPWRNYSRTVYLESFIDAFIDPKGWIEWNNDNKRSDTLYYGEYDNYGPGSTTDSRVQWLGYHLMDYGDAYNFTVSQFINADDWLDTTLVPYDNGV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00529 559 FunFam Pectinesterase 35 185 - -
Vimu10g00529 559 FunFam Pectinesterase 4 223 559 - -
Vimu10g00529 559 Gene3D - 221 559 IPR012334 -
Vimu10g00529 559 SUPERFAMILY Pectin lyase-like 224 556 IPR011050 -
Vimu10g00529 559 CDD PMEI-like_3 41 185 - -
Vimu10g00529 559 NCBIfam pectinesterase inhibitor domain 8 183 IPR006501 GO:0004857
Vimu10g00529 559 MobiDBLite consensus disorder prediction 182 202 - -
Vimu10g00529 559 PANTHER PECTINESTERASE 16 549 - -
Vimu10g00529 559 SMART PMEI_2 34 182 IPR006501 GO:0004857
Vimu10g00529 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Vimu10g00529 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 185 IPR035513 -
Vimu10g00529 559 Pfam Plant invertase/pectin methylesterase inhibitor 38 181 IPR006501 GO:0004857
Vimu10g00529 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 183 IPR035513 -
Vimu10g00529 559 Pfam Pectinesterase 227 306 IPR000070 GO:0030599|GO:0042545
Vimu10g00529 559 Pfam Pectinesterase 331 545 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00529 Vimu-Chr10 4237459 4239346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00529 20 559 Carbohydrate Esterase AT2G26440 57.554 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00529 - - gmx:100776969 852.818