Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00527 ATGGTCTACGAGCAAACCTGCATCGACGGGATTCCCGAAGGAAAGATGAAGGAAGACTTCACGAAGCTATTCGCCGAGTCAAGGGAGCTTGTGAGCAATGCCCTTGCCGTTATGTCGCAGTTTGCTTCGTTCTTTTCGATCTTCCAAGGAGCTGGGAACATTCACCTTCCATGGGAAACCACCGATAATGATGCACCTGCCCCTGCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTCCTGGTTCTGCTCCTGCTCCTAGCTCTGCTCCTCGTGCAGCTCCGGGCCCAATGCCTTCCTTGGATGGTCCACTTCCAACATTGCCTATCCCTGCTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAGATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGAAGCGGAGACTTCAAAACCATCTCTGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAGGAAAATGGTAAACCTAACCATGTATGGTGACGGAGGTGACAAGAGTATCATCACTGGCAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGCAGAGAGATGCAATTCAGAAACACTGCAGGAGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTCAACTGTGTCTTTGACGGTTACCAAGACACACTCTACGCACAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGGGATGCATCAGCAGTGTTTCAAAACTGCACTATGATGGTGAAAAAGCCCCTTGAAAACCAGCAGAACATTGTGACTGCACAAGGGAGACTGGACAGGCAAGAAAACACTGGGTTCGTTCTGCAGAAGTGTGTGATAAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGGACGGTGAGGAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATAGAGGACTTGATTCACCCAGATGGATGGCTTCCATGGGAAGGGGACTTTGCACTCAAAACCTTGTACTATGGTGAGTTCAACAACAATGGAGTAGGCGCCAGCACCTCCGCTAGGGTCAATTGGCCTAACCGCAAAAACATTGATAGGGATGAGGCTAACAGGTACACGGTTGAGGCTTTTTTGCAAGGGTCTTGGATCAATGGAACAGGAGTCCCAGCTCAAATGGGCTTGTACTCTTAA 1320 0.4962 MVYEQTCIDGIPEGKMKEDFTKLFAESRELVSNALAVMSQFASFFSIFQGAGNIHLPWETTDNDAPAPASASSASSASAPGSAPAPSSAPRAAPGPMPSLDGPLPTLPIPAWAGPSEFKGSDEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTRKMVNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGREMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTMMVKKPLENQQNIVTAQGRLDRQENTGFVLQKCVIKAADDLVPLKGTVRNYLGRPWKEYSRTIIMETQIEDLIHPDGWLPWEGDFALKTLYYGEFNNNGVGASTSARVNWPNRKNIDRDEANRYTVEAFLQGSWINGTGVPAQMGLYS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00527 439 ProSitePatterns Pectinesterase signature 2. 272 281 IPR033131 -
Vimu10g00527 439 SUPERFAMILY Pectin lyase-like 126 432 IPR011050 -
Vimu10g00527 439 Pfam Pectinesterase 128 423 IPR000070 GO:0030599|GO:0042545
Vimu10g00527 439 Gene3D - 123 437 IPR012334 -
Vimu10g00527 439 FunFam Pectinesterase 122 437 - -
Vimu10g00527 439 MobiDBLite consensus disorder prediction 65 83 - -
Vimu10g00527 439 PANTHER PECTINESTERASE 1 427 - -
Vimu10g00527 439 MobiDBLite consensus disorder prediction 87 110 - -
Vimu10g00527 439 MobiDBLite consensus disorder prediction 59 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00527 Vimu-Chr10 4228010 4229562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00527 1 438 Carbohydrate Esterase AT2G26450 48.307 1.36e-145 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00527 - - gmx:100807628 693.73