Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00526 ATGGATAAAATTAGCCATTGTTGTCCTTTTCTTCATCTGAGAGTGAGAACACAGCAATTTGTGGTAACCCTTTCAGTATTAGGCAGTGCACTGTCGTGGATCACCACTTCTGATGCTCTGATCAATGAGTGCAGTCTTACTAGATATCCCGATCTATGTGCTCAAACCTTGATGCAATTTGGTTCATCCAATCAAAGTCTTGATCATAACATTTTGGCTCTTGTCAACAAAACCATTTTAGAAACTAGCTTGCCAAGTTCGTATTTTGCTGATTACAAGACTGATGATGAAGATGAAGCCCATTCTGTCGTTACAGATTACTGTGAAGAGCTTATTGGCATGTCATTGAAAAGGTTAGATCAATCCCTGAGAGCACTGAAATCCCCTACAAGAAACAACAATGACATTCAAACATGGCTAAGTGCTTCCATAACTTTCCAACAAACTTGTAAAGACTATGCAGATGCACACACCACAATCTCTGGAGGAGGCCTTATGCAAAGAATGTCAGACAAAATGCACTATCTTTCTCAACTGGGAAGCAACTCATTAGCATTTGTTAACCATGTGAGCAAAAAAGGTAGCGAGAAAGGTGAGACTAACAAAGAGGAAGATGAATTTCCCAAGTGGGTATCAGCCAAAGGACGTAAGCTGCTTCAAGGAGGCAGCATAAAAGCAAATGCCATAGTTGCACAAGATGGTTCAGGAGATTACAAGACAGTTTCTGAAGCCATTAAAGCAGCTTCAGGGAACAGGTTTGTGATTTATGTGAAGGAAGGGACTTATAAAGAGAAGATTCGCACCAGCAAGGATGGTATCACCTTAGTTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGTGTTGCCGAGGGTTCTTCCTTAACTGAGTCAGCCACGTTTACAATATCCGGCGATGGCTTTATCGCACGTGACATCGGATTCCAGAACAACGCTGGCCCAGGAGGCGAACAAGCGGTGGCTCTGAACATAGCCTCCGACCATGCCGTCCTCTACCGGTGCAGCATATCAGGGTACCAAGACACCCTCTACGCCCTCGCCCTCCGCCAGTTCTACGCAGAATGCGACATTTACGGCACGATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACCTCCTCCTGCGCCACCCTCGCGGCTCCAGCTACAACGCCATTCTTGCCAACGGCCGAACTGACCCCGGCCAGAACACCGGGTTCTCCGTTCACAAGAGCACTATATCGCCGACCTCGGACTTTAAGCAGTCGCACAGTTCGTTTCTGGGGAGACCCTGGAAGGAGTATTCGAGATCGGTGGTGATGCAGAGTACAATCGACGAAGTGATTGCGGCGAAAGGGTGGGTGGCGTGGCCTGGGTATGGAAGCTCCGTGTTGAAGAGTTTGTATTTCGCGGAGTACGGCAATGAAGGAGGTGGTGCTGGAACCGGAGGGAGGGTGGAGTGGCAGGGTTTTCATGTTCTTAAGGATGAAGATGCTTCCAAATTCACTGTTGCTAATTTTATTGCTGGAAACTCGTGGATTCCTTCCACTGGAGTTAATTTCATTTCAGGACTTAATTAA 1599 0.469 MDKISHCCPFLHLRVRTQQFVVTLSVLGSALSWITTSDALINECSLTRYPDLCAQTLMQFGSSNQSLDHNILALVNKTILETSLPSSYFADYKTDDEDEAHSVVTDYCEELIGMSLKRLDQSLRALKSPTRNNNDIQTWLSASITFQQTCKDYADAHTTISGGGLMQRMSDKMHYLSQLGSNSLAFVNHVSKKGSEKGETNKEEDEFPKWVSAKGRKLLQGGSIKANAIVAQDGSGDYKTVSEAIKAASGNRFVIYVKEGTYKEKIRTSKDGITLVGDGKYSTLIVGDDSVAEGSSLTESATFTISGDGFIARDIGFQNNAGPGGEQAVALNIASDHAVLYRCSISGYQDTLYALALRQFYAECDIYGTIDFIFGNAAAVFQRCNLLLRHPRGSSYNAILANGRTDPGQNTGFSVHKSTISPTSDFKQSHSSFLGRPWKEYSRSVVMQSTIDEVIAAKGWVAWPGYGSSVLKSLYFAEYGNEGGGAGTGGRVEWQGFHVLKDEDASKFTVANFIAGNSWIPSTGVNFISGLN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00526 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Vimu10g00526 532 SUPERFAMILY Pectin lyase-like 225 530 IPR011050 -
Vimu10g00526 532 CDD PMEI-like_3 44 192 - -
Vimu10g00526 532 Pfam Pectinesterase 227 517 IPR000070 GO:0030599|GO:0042545
Vimu10g00526 532 Pfam Plant invertase/pectin methylesterase inhibitor 44 185 IPR006501 GO:0004857
Vimu10g00526 532 FunFam Pectinesterase 4 224 531 - -
Vimu10g00526 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 191 IPR035513 -
Vimu10g00526 532 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Vimu10g00526 532 Gene3D - 221 531 IPR012334 -
Vimu10g00526 532 PANTHER PECTINESTERASE 31 521 - -
Vimu10g00526 532 FunFam Pectinesterase 37 191 - -
Vimu10g00526 532 SMART PMEI_2 36 186 IPR006501 GO:0004857
Vimu10g00526 532 NCBIfam pectinesterase inhibitor domain 35 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00526 Vimu-Chr10 4208845 4211541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00526 37 532 Carbohydrate Esterase AT3G49220 41.379 7.30e-124 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00526 K01051 - gmx:100795439 764.607