Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00505 ATGTCCAATCCTCAAACCTCGCCACCGCCACCGCCGCTGCCGGTCATGACTCCGCCGGCAACCCCTCTCAACCATGAAACGACGTCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCCGTTCCCCTTCCTCACTCAGTGGAAGTGATTGACGTTGACGATTCCCCTACCTCGGCCTTTTTCACACCCATCTCCTTCCGAGGCACGATCAGGTCAAACGCTGTCTCCGTTGAGCAACGGGACGGTTTTTCCAAATCTGTCCACGTCATCGATCTTTCCGACACCGAGGACGACGATGATTTACGTATCCTCAACTTCACTCCCGCAAACACCTCTTTTGGCAAACGGAAAAGGTTTAGGGGAGAATCCTCCAACGCAGCCCCCTTCGACTGCGAAATCTGCGCTGAAACCAAAACATCCAAGGAAGCCTTCTTCATCAGCGGCTGCTGCCACGTGTACTGCAACCACTGCATCGCGCTCTATGTCGAATCGAAGCTCCAGGACAACGTGGTCAACATAGGCTGCCCTGTGCCGCGGTGCAGGGGATTATTGGAAGCCGAAGATTGCCGTTCGATTCTCGCGCCTGACGTTTTGGATCGGTGGGGTAAAGCGCTGTGTGAGGCGGTGATTTCTGTGGAGGAGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGAGGAGAAGGATGAGGGTATCAGAGAATCGAATTGTCCTAACTGTGGGAGGCTGTTTTGTGCGCTGTGTAGGGTACCCTGGCACGAGGACATACCCTGTGAAGAGTTTCAGAAACTGAACGCCGACGAGAGGGGAAGAGAGGATTTGATGCTGAGGAACCTTGCCAAGCAAATGATGTGGAAGAGGTGCCCCACTTGTCGGATTTACGTCGCCAAAACCTCTGGCTGTGTGGGAGTGCCTTCTGTTACAACTGTGGGGTTCCTAACTCATCTAACCTCCATTATTGCTCCTCCTGTAGAAGATAATATTATTACGGCAGCAAGGAAGTTTCAAACGTACCATCTCATGGAAGCTAATCTAAATTCTTCTCTAATTCCTCTCACCTACTGA 1077 0.5181 MSNPQTSPPPPPLPVMTPPATPLNHETTSHKKNRRTTGVPVPLPHSVEVIDVDDSPTSAFFTPISFRGTIRSNAVSVEQRDGFSKSVHVIDLSDTEDDDDLRILNFTPANTSFGKRKRFRGESSNAAPFDCEICAETKTSKEAFFISGCCHVYCNHCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPDVLDRWGKALCEAVISVEEKFYCPFPDCSVLLIREEKDEGIRESNCPNCGRLFCALCRVPWHEDIPCEEFQKLNADERGREDLMLRNLAKQMMWKRCPTCRIYVAKTSGCVGVPSVTTVGFLTHLTSIIAPPVEDNIITAARKFQTYHLMEANLNSSLIPLTY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00505 358 SUPERFAMILY RING/U-box 205 267 - -
Vimu10g00505 358 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g00505 358 ProSiteProfiles TRIAD supradomain profile. 127 346 IPR044066 -
Vimu10g00505 358 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 306 IPR031127 GO:0004842|GO:0016567
Vimu10g00505 358 CDD BRcat_RBR_unk 214 265 - -
Vimu10g00505 358 FunFam RBR-type E3 ubiquitin transferase 126 212 - -
Vimu10g00505 358 Pfam IBR domain, a half RING-finger domain 207 262 IPR002867 GO:0008270
Vimu10g00505 358 MobiDBLite consensus disorder prediction 1 19 - -
Vimu10g00505 358 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Vimu10g00505 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 213 IPR013083 -
Vimu10g00505 358 Gene3D - 216 267 - -
Vimu10g00505 358 SMART ibrneu5 199 262 IPR002867 GO:0008270
Vimu10g00505 358 SUPERFAMILY RING/U-box 128 208 - -
Vimu10g00505 358 ProSiteProfiles Zinc finger RING-type profile. 131 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00505 Vimu-Chr10 3959279 3961176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00505 131 305 C3H Transcription Factor Family AT2G19610 29.730 1.35e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00505 K11975 - gmx:100803898 412.92