Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00504 ATGATCTGGGTCGTTCCCTTTTCTTCAATCTCAGAGTTGTGTTGCTGTTCCCAATTCTTACGGGACAAAGCTAAAACCTTCATTCCTATCTTCTTTCTGGGTTTGCTTTTGCTATCTTGTAGAACCGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCACGTGACATTAAACAGAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCATCCTCCTTATCCCTTTCCAGAGCTTGCTTCTTCTGGCAGTCTTGAGGTCAAGTTGTTGATCAAACCTAATACCGATGAACTCGGTCGGGCTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCTGCTAGAAGATAGGGGAGAAATTGGGACCCTTGTATGGGAGGATTTTGACCTGTCTTCCCCAGAAGCATTGTGTGGATTATTTGGTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAGGGAGAGAAATTGGCGGAGGCGCTCCATAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCTGTAGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCGTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCATAAGGGTGCTGGTAAGTTTGGGCCACAAATTTTTGGGGTTCCTCCCAACATTGATACCAGTCAAAGTGTAGCAGACATGAAGGAAGAGGAGGAGGAAAGTTCAACTGAAACTATATCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCTTGCTTGTTGGGATCATTAGAGGATGGACTCAATGCTCTTCTATTTACAGAACTTTTGGAGAATCATATTAAGAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCCTTGGAGCCTCGAAGGTCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCATCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAGCGCCTCCTTTTTTTTTGTACTAAGCAGGAGAAAGAAGACTGTCATAACGAGCAAGTTTTCTCTGCGATTCCAAGTTGGCTGAAGCCTCCACCGCCCAGTCGAAAAAGATCTGAACCATGCACTAGTTCAAAGTCTATCAATCCTAGTGGCCGGGGAATTGAAGATCTTGGTAGTTATAGACAGAAATTAAATCTTGCTGCTATGAGGCCGATTCCTCAATCTCATAGACACAAGATTCTCCCTTTTTCTGCATTGTCTGGGGGTGCCAGATATGATGGAGACCATGGAAAGTCAAATCAGCTGCTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCGGTTACAAACAGGAAATCTGTGTCGAACTCATTTCAAGCTAACCAGATTATTTCTTTGAACCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGACTTCCTGAGGGATGTAATGCAGTTTTTGATCCTTCGGGGGCATAATCGTCTAATTCCGCCAGGTGGACTTGCCGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGGTTTCATGTTGGAAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACTGGGGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTGTTAGAATATGAATTAGCTCATGACGATGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGATTGGGTGAACTGTGGCGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGTCTAGGAGCATTTAAGGACTATGCAAAAACAGATGGACTGGAATACGTTTGTCCTCGCTGCAGTGCATTAAAGTTCAGTAAAAAATCTCAAAAAACTGCAAATGGTTATTGA 2202 0.4314 MIWVVPFSSISELCCCSQFLRDKAKTFIPIFFLGLLLLSCRTGVSRHCSLLAVLSGKSRDIKQKQKQSAASEDHPPYPFPELASSGSLEVKLLIKPNTDELGRALEQLQPDFVYLQGQLLEDRGEIGTLVWEDFDLSSPEALCGLFGSKLPNTVYLETPKGEKLAEALHNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSHKGAGKFGPQIFGVPPNIDTSQSVADMKEEEEESSTETISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLNALLFTELLENHIKKELIEKSQLVQAFPNHEQSKSPSLEPRRSASVACGSSVFEVCMRVPAWASQVLRQLASNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTKQEKEDCHNEQVFSAIPSWLKPPPPSRKRSEPCTSSKSINPSGRGIEDLGSYRQKLNLAAMRPIPQSHRHKILPFSALSGGARYDGDHGKSNQLLAPIKHNVSGPTSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEDFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00504 733 SUPERFAMILY FYVE/PHD zinc finger 659 722 IPR011011 -
Vimu10g00504 733 SUPERFAMILY ARID-like 557 671 IPR036431 GO:0003677
Vimu10g00504 733 SMART ARID_2 553 656 - -
Vimu10g00504 733 Gene3D - 554 659 IPR036431 GO:0003677
Vimu10g00504 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 723 IPR013083 -
Vimu10g00504 733 ProSiteProfiles ARID domain profile. 556 660 IPR001606 GO:0003677
Vimu10g00504 733 MobiDBLite consensus disorder prediction 431 460 - -
Vimu10g00504 733 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 312 733 IPR042293 -
Vimu10g00504 733 CDD ARID 558 656 - -
Vimu10g00504 733 CDD PHD_ARID4_like 666 717 - -
Vimu10g00504 733 Pfam ARID/BRIGHT DNA binding domain 559 656 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00504 Vimu-Chr10 3947593 3953866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00504 43 732 ARID Transcription Factor Family AT3G43240 59.279 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu10g00504 ARID 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00504 - - gmx:100808357 1130.55