Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00503 ATGGCTTCTTCTAATTCCCTTTCTTCTCTCAACGTCGTCGGATACACAAACACTACTTCTCCACCAACCAACCACCTATCATCCCCATCACACATCACTCTCCTCGCGCTAACGCTTCTCATCCTCGCCGTTACCGTTTTGCTAGCTGTTTATTTCCTTCTCCGTTACCGCAACCGTTTCCTCCGTCGTATCTCTCCCTCATCCGCTTCATTATTCTCGTCAGGGAATCCGATATTGTCGGATACCGCTTCGCCTTCCATCGTCGGCTCTCTACCGGCGTTCTCCTTCTCCTCCGTGACGCGACGCTCCGCCGCATCCGGTGGCGGCGAGGACTGCGCCGTGTGCTTATCGAAGTTCGAGCAGCACGACCTTCTCCGCTTGCTACCTCTATGCTGCCACGCGTTCCACGCTGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCAGCGCGTCGGAGTCTGACCTCGCCAAGGTCTTCTGCTCGTCGTCCGTCGCCGGCGGCGAGAGCTTTCGGCTTGAGCTAGGGAACATCAGCAGCAGCGACCGCCGTGGAGCGGCTGCCGGCGAGGAAACGCGCGGGAGGTCCTATTCCGTTGGTGCCTTCGAGTATTTAATCGACGAGGAGGCTGTGGCTGAGGTTGAGGTTGAGGTTGCCGTCGGTTATGCTATCCAGAGAAGCGTTTCAGGCGAGAAACATGACAGCGCTACGGTGGAGGCTGCGGCAGATTCTCTACCGAGCTTGGCTGCTGAGGTAGGGCGTGGAGGAAGTAGCAATAGTAGTGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAATTCTGGAATGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTCAGGGTGGAGATTACGATGCGGAAGCCAACCGTTTGGGGGATGAAATTGGTGAAATGTTTCGATGGCTCTCGGCGGTTTGA 987 0.5613 MASSNSLSSLNVVGYTNTTSPPTNHLSSPSHITLLALTLLILAVTVLLAVYFLLRYRNRFLRRISPSSASLFSSGNPILSDTASPSIVGSLPAFSFSSVTRRSAASGGGEDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAVSASESDLAKVFCSSSVAGGESFRLELGNISSSDRRGAAAGEETRGRSYSVGAFEYLIDEEAVAEVEVEVAVGYAIQRSVSGEKHDSATVEAAADSLPSLAAEVGRGGSSNSSGWLKDYVDRLSNTMSFRNSGMFFTGSSRRSDVVQGGDYDAEANRLGDEIGEMFRWLSAV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00503 328 FunFam E3 ubiquitin-protein ligase ATL6 79 160 - -
Vimu10g00503 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 32 225 - -
Vimu10g00503 328 SMART ring_2 112 153 IPR001841 -
Vimu10g00503 328 Pfam Ring finger domain 111 154 IPR001841 -
Vimu10g00503 328 CDD RING-H2_EL5-like 111 154 - -
Vimu10g00503 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 164 IPR013083 -
Vimu10g00503 328 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Vimu10g00503 328 SUPERFAMILY RING/U-box 108 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00503 Vimu-Chr10 3940219 3941205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00503 30 154 C3H Transcription Factor Family AT2G34990 37.984 6.92e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00503 K10663 - gmx:100804962 405.216