Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00497 ATGAACGAACCAGAATTGGAACTCCTTCCCCTCTTTCCTTTACTTCTCACACTTCAAGGGCAAAGAAATGAACAGCTCTTCTTCTTCTTCGTCTGCTGCTGTTTTTATCGCACGCTCTCGGCATCCAAGTCCATGACACTGCAATTTCTTCTCCTTCTGCTCTCTCTACTCGCTGTTGCTTCTCATGGACTCGCTTCCAATGCTACACTGAACGAGACTTGTAGATACTTCGATGGTTCTCTCAGTAGAGATACAAAAGTACCTTGCCCTATTGGTTGGGTTATGGACCCTAACAAGACCAAGTGCTTTCTTCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAAATCTGTTGTAGTAAGTATGGTGGACATTTAGCTTCATTGACATCACTTCAGGAGCTACAATTTGCTCAGAGCCTCTGTGGTGAATCTGTGAATAGTTGCTGGATTGGTGGACAAAGACGCAACACCACAACTGGTTATCAGTGGATGTGGTCTGACAATTCACCAGGGAATAACTCCATATTTCCATTGGAAACTGTTCCGCCCCATTGTAACGGAACTGGATTATCCTGTCATAGAAACAATACAGATAATCTGTGCACGGTAATGACTAATAATTCAAACTCTCTCGTGAGTGAGAGATGCGATAATCCTCACTCTTCTCTGTGTATACTTGATATAGATGCAGCGTGTAACCGGATGCACTGCCATAGGGATTATTACCTTATCATCCTCATAGTAGTGAGTGCATTGATACTCTCCACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAACGGGGCAAGAAAAGAAGGCGGTCTAGAAAAATATCTGTTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAATTAAGGTCAATTACGAAGAATTTCAGTGAAGGTAATCGTCTTGTTGGTGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCGAGGGTTGCAGTTAAGAGATTGAAGAGGACAAGCTTTCAGAGGAAAAAAGAGTTTTATTCTGAAATTAGCAGGGTTGCTAGGCTTCGATATCCCAATCTGGTTGCTGTGATGGGATGCTGCTATGATCATGGTGATCGCTACATTGTCTATGAGTTTGTAGCTAATGGTCCCTTAGATAAATGGCTGCATCACATACCTAGGGGAGGTCGTAGCTTAGATTGGGCTATGAGGATGAAAATTGCTACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGTGCAAGTAATGTACTCCTGGATGAGGAGTTTGGAGCACGCCTGATGGGTGTTGGTCTGTCCAAGATTGTGCCATACGAAGTAATGCATGAGAGAACTGTCATGGCAGGTGGAACTTACGGATATCTTGCTCCAGAGTTTGTGTATAGGAACGAGTTTACAACGAAGAGTGACGTATATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGCGGACGTAGACCTACACAGGCAGTTGATTCCGTTGGTTGGCAGAGTATCTTTGAGTGGGCAACACCTCTTGTGCAAGTTCATCGCTACCATGAACTCTTGGATCCTCATATAACTTCATCCTCTTCTAGCATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCCTGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAGATTGCCCAACCACCTGCAAAGTAA 1779 0.4401 MNEPELELLPLFPLLLTLQGQRNEQLFFFFVCCCFYRTLSASKSMTLQFLLLLLSLLAVASHGLASNATLNETCRYFDGSLSRDTKVPCPIGWVMDPNKTKCFLHVGRPQSWNDSEICCSKYGGHLASLTSLQELQFAQSLCGESVNSCWIGGQRRNTTTGYQWMWSDNSPGNNSIFPLETVPPHCNGTGLSCHRNNTDNLCTVMTNNSNSLVSERCDNPHSSLCILDIDAACNRMHCHRDYYLIILIVVSALILSTTLAVVVWLLVYKRGKKRRRSRKISVPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRTSFQRKKEFYSEISRVARLRYPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGARLMGVGLSKIVPYEVMHERTVMAGGTYGYLAPEFVYRNEFTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQVHRYHELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00497 592 Pfam Lectin C-type domain 109 225 IPR001304 -
Vimu10g00497 592 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 125 587 - -
Vimu10g00497 592 ProSiteProfiles Protein kinase domain profile. 306 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00497 592 ProSiteProfiles C-type lectin domain profile. 98 226 IPR001304 -
Vimu10g00497 592 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 382 592 - -
Vimu10g00497 592 CDD CLECT 101 225 - -
Vimu10g00497 592 SUPERFAMILY C-type lectin-like 88 225 IPR016187 -
Vimu10g00497 592 Gene3D Transferase(Phosphotransferase) domain 1 382 591 - -
Vimu10g00497 592 SUPERFAMILY Protein kinase-like (PK-like) 279 584 IPR011009 -
Vimu10g00497 592 Pfam Protein tyrosine and serine/threonine kinase 316 583 IPR001245 GO:0004672|GO:0006468
Vimu10g00497 592 SMART CLECT_2 89 226 IPR001304 -
Vimu10g00497 592 FunFam C-type lectin receptor-like tyrosine-protein kinase 283 381 - -
Vimu10g00497 592 Gene3D Phosphorylase Kinase; domain 1 283 381 - -
Vimu10g00497 592 Gene3D - 62 228 IPR016186 -
Vimu10g00497 592 SMART tyrkin_6 315 583 IPR020635 GO:0004713|GO:0006468
Vimu10g00497 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 428 440 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00497 Vimu-Chr10 3890761 3895773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00497 119 589 Receptor kinase-like Gene Family AT1G52310 69.583 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vimu10g00497 PK_Tyr_Ser-Thr 8.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00497 - - vra:106762676 1067.37