Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00495 ATGGGCCTCCAAGGTACTCGGCCCAAAAAAAAGGGAACAAGAGAAGAAATAATGGGGGTGAAGAAGCTTAATCAGGGAGTGAAAAACGAGGGTATTGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTTGAAGTTCCGACGCTGGTACAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTAAATGCTGCAACGGGCACGGGGAAGACTGCTGCTTATCTCGCTCCGATTGTTCATCTCTTGCAGGGTTACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGGTGCCCCTTGGCTTCGCGTGAATTTTATAGAGGAGGGGGATGGTGAGAGTGAAAGTTGGAACTTCACGTTGGTTCTTGTACCGACGCGTGAGCTATGCTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATATATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGAAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTGGATCACTTGAAGAACACAACATCATTCTTGCACTTAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAGCGCATGATGACCAAAAGAATACAGTTACAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGATAAGAAAATAGAACAAATTGCAACAGCTGTAAGCAATGATCATTCAGAATCTGATGAAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCACGACTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCGCAGAAGGAGGACCGGAGAACTAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACGGAATATGTTCATAGGTATCTGCCTATTTTCACGGTTGGTAGAACTGCCCGACTGGGTGAAAAAGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTCTCACTCACAGAGTATCCTATCCTCAAAGTGTTAGATAGTTTTCCACTATATGGACAAAAGAATTACACGAAGAAGTCAGTGTTCATAGATTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGGAGGGGGGTTGTGTCTGGATGCTGAGTGTGGAAATAAAGGGAACTTTTTTAAATCTTCCTGTTAAAATTAACCCCAAAATTCAAGGGTGGGAAGAAGCTATAGATTTGAGAGGCGAAGTAGCCAACAAGGTTGTGGATTTGACCTTCCCTCTGTCTGTTGATTCCCATTTCTTACCCAGGAGTTACACTTCCAAATATATTAAAGAGACAATTGCCCCCAAGTTTGCCGAGGTAGATAAACTTGCTAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCACATCGTGGTGAATTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCCTCTCTAGTTGGACAGTCATTCCAAAAGCAAGCTAAGAAGAGAAAGAGATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACGATGA 2007 0.4175 MGLQGTRPKKKGTREEIMGVKKLNQGVKNEGIGSNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHLLQGYENRIQRSDGTFGAPWLRVNFIEEGDGESESWNFTLVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHLNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTAHDDQKNTVTRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDDKKIEQIATAVSNDHSESDEDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPVLLSIIKHLFEREPSQKEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRYLPIFTVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPILKVLDSFPLYGQKNYTKKSVFIDSHPWVLCLQKALEAFIMSKEGGCVWMLSVEIKGTFLNLPVKINPKIQGWEEAIDLRGEVANKVVDLTFPLSVDSHFLPRSYTSKYIKETIAPKFAEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRFERKTGVSKKRKVGSVTERRR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00495 668 Pfam DEAD/DEAH box helicase 68 280 IPR011545 GO:0003676|GO:0005524
Vimu10g00495 668 CDD DEADc_DDX31 53 293 - -
Vimu10g00495 668 SMART ultradead3 62 302 IPR014001 -
Vimu10g00495 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 292 IPR014001 -
Vimu10g00495 668 MobiDBLite consensus disorder prediction 640 654 - -
Vimu10g00495 668 CDD SF2_C_DEAD 366 442 - -
Vimu10g00495 668 Gene3D - 7 295 IPR027417 -
Vimu10g00495 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 485 IPR027417 -
Vimu10g00495 668 Gene3D - 359 486 IPR027417 -
Vimu10g00495 668 PANTHER RNA HELICASE 40 497 - -
Vimu10g00495 668 SMART helicmild6 355 433 IPR001650 -
Vimu10g00495 668 Pfam Helicase conserved C-terminal domain 367 432 IPR001650 -
Vimu10g00495 668 MobiDBLite consensus disorder prediction 306 325 - -
Vimu10g00495 668 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 71 IPR014014 GO:0003724
Vimu10g00495 668 SMART DUF4217_3 568 635 IPR025313 -
Vimu10g00495 668 MobiDBLite consensus disorder prediction 634 668 - -
Vimu10g00495 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 480 IPR001650 -
Vimu10g00495 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 292 IPR027417 -
Vimu10g00495 668 Pfam Domain of unknown function (DUF4217) 578 632 IPR025313 -
Vimu10g00495 668 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 220 228 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00495 Vimu-Chr10 3880824 3887201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00495 34 465 Eukaryotic Initiation Factors Gene Family AT3G19760 24.944 4.96e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00495 K14806 - gmx:100805157 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00495 10 3880824 3887201 Vimu10g00495 10 3880824 3887201 ECH