Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00494 ATGTACGGAATAATTGTGATAAAGATAGCTGTGCTTGCCACAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTCGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCGCAGATGACCCTTCAACCTGTTACTAAATATGACAAGGAAGCAATACTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGAAGAGCTGCAGAGAAAATATTCCCACTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACTTGGACATTTAGACATATTTATCGAGGACAACCAAAGAGGCATCTATTGACTACGGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGTATAAAAAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGGATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATTTTCTATAATCCAAGAGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCTCTCTACAATCAAGCTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTACGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGCATTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTCTTTAGGCCGAAGTTTCCCAAGCAGCCAGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGAATGAAGGATGCCTCAAGTTCAATCTTCCCAGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAAAATAATCAGTTCTCCGCTGCCCAATCTGGATTTATGCCTCCATCCATGCTTTCATCCAATACACTCCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTACAATTTAACAAACCTAACTTACCAAACCAAGTCAACCAATTGCAACAACCCCAAACGTCGTGGCCTCCGCAGCATCAACAACAGCAGAAGGTGCAGTCATTGATGCCAACAACCTTAAACCCGCTCCAACAGCAGCAACAGAGGCAACAACAGCTGCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCTCAACAGAGAGCACAACAGCCACAGCAACAGCAACAACAGTCATGTCAACAGACCATCATCAATAATGAGGCAGTTTCTTCTAACCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAATATCCCACCCCAACAAAGTTTTCAATCACCCAATAAGAATGCATTGCTGATGACATCCTTACCGCAAGATTCTCAGTTTCAACAAATTGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAATCATCTCCATTGCAGTTATTGCAACAAAGCATGTCACAGAGGACGCCGCAGCAACAACAAATGACACAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTGCATTTGCTACAGAAGTTGCAGCAACAACAGCAGCAACAGCAACAACAGAAACAACAACAACTCCTTTCCACTTCTAGCCCCCTTTTGCAGTCGCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGCCATCAGCCTCAACAGCTTGGCAACAGTGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAGCAGTTTCCTATGAACCAATCCCAAAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACACTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCGTCTACTAATAACTGCCAGATATCTCCTTCAAATCTGATTAAAAGAAATCAACAGGTACCAACCACATTAGGAGGACCTTCGGTAGTTGAACCCACTATTCATTTGATACAGGAGCTTCATAGAAAGTCTGAGATGCAGATCAAACACGAATTACCCTGTGTAAGAGGACCTGACCAGCTGAAGTGCAAAGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACACTATCGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAGTTTCTGCATGGACGGTGATGTCCAATCGCACCCGAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTACAAAACTTGCTGTCCAATTATGGTGGTGCACCAAGAGACATTGAAACTGAGCTTTCCACTGCTGCCATTAGTTGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGACATTGCCATCAATGACCCTGGGGTTTTGAATAACGGCTTGTGGGCTAATCAAACTCAAAGAATGAGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGGTATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGAATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTAGATGGAGATTTAGGACATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAACCGATAA 3363 0.4392 MYGIIVIKIAVLATGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQASLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKHSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFMPPSMLSSNTLHGNLPTDDPSKLLNFQAPVLSAPNLQFNKPNLPNQVNQLQQPQTSWPPQHQQQQKVQSLMPTTLNPLQQQQQRQQQLPVLQNLSQPQQQQPQMPQQRAQQPQQQQQQSCQQTIINNEAVSSNQIPNQCVQQPVTYSQLQQQQLLSGNIPPQQSFQSPNKNALLMTSLPQDSQFQQIDQQASLLQRQQQQTQLQSSPLQLLQQSMSQRTPQQQQMTQMSQQNSSEQQPQLHLLQKLQQQQQQQQQQKQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNSAFSMEKLFNGNNYSSSALMQTQQFPMNQSQNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQVPTTLGGPSVVEPTIHLIQELHRKSEMQIKHELPCVRGPDQLKCKGTIADQMEASSGTSYTIDPNNIHQNFPLPSFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISCSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00494 1120 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vimu10g00494 1120 Pfam AUX/IAA family 990 1079 IPR033389 -
Vimu10g00494 1120 Gene3D - 289 360 - -
Vimu10g00494 1120 Gene3D - 988 1082 - -
Vimu10g00494 1120 MobiDBLite consensus disorder prediction 470 503 - -
Vimu10g00494 1120 FunFam Auxin response factor 289 361 - -
Vimu10g00494 1120 ProSiteProfiles PB1 domain profile. 993 1086 IPR000270 GO:0005515
Vimu10g00494 1120 SUPERFAMILY CAD & PB1 domains 1007 1071 - -
Vimu10g00494 1120 FunFam Auxin response factor 124 228 - -
Vimu10g00494 1120 MobiDBLite consensus disorder prediction 528 550 - -
Vimu10g00494 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1082 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu10g00494 1120 Coils Coil 678 698 - -
Vimu10g00494 1120 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vimu10g00494 1120 Gene3D - 123 227 IPR015300 -
Vimu10g00494 1120 MobiDBLite consensus disorder prediction 1098 1120 - -
Vimu10g00494 1120 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu10g00494 1120 SMART B3_2 126 228 IPR003340 GO:0003677
Vimu10g00494 1120 MobiDBLite consensus disorder prediction 640 680 - -
Vimu10g00494 1120 MobiDBLite consensus disorder prediction 763 803 - -
Vimu10g00494 1120 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vimu10g00494 1120 FunFam Auxin response factor 988 1082 - -
Vimu10g00494 1120 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00494 Vimu-Chr10 3830447 3836400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00494 15 489 B3 DNA Binding Superfamily AT1G19220 82.947 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu10g00494 AUX_IAA 2.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00494 K14486 - gmx:100815277 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00494 10 3830447 3836400 Vimu10g00494 10 3830447 3836400 ECH
Vimu7g01531 7 14425383 14430407 Vimu10g00494 10 3830447 3836400 PCT