Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00491 ATGGTGAAGCCTGGTGGCGTGGAAAAAACTACGGAGGAGCGAACCAATACGTCGTACAGGGGAGTACGAAAGAGGAAGTGGGGAAAGTACGTGTCGGAAATTAGGCTTCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCTTTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGCGCCAAATTTAACTTCCCGAATGACCCGCCCAACATCGCCGGGGGGAGGACCATGACCCCCCCTCAAATTCAGATAGCCGCGGCTCGTTTCGCCAACTCGGAGCCCCAGAAAGAGTGTTCCGGTCAGCAACATGTGGAGTCTTTAGCTTCGGACGAGGAAACGGCGTCGCTCAGGTTGGAGTCGTCGTCTCCTCCTCTCTCCGACGTGTCGGTTCAGAACGACCCCATATTCCAAAACGGGTCATTCCCCGACCCGTTTTCGGATCTCGGGTCGGGCAGTTTCGCCCCGGAGTTCTCCGATTTTCCGTGTTTCGACGATTTCAGCCGCGATTTCTTCTTGCCGGGGCTTCCGAGTTTCGATGACGGAGAAGAGAACGTGGACGGGATGATAGTCCAGGACCCGTTCTTGTGGAACTTCTAA 627 0.5678 MVKPGGVEKTTEERTNTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPNDPPNIAGGRTMTPPQIQIAAARFANSEPQKECSGQQHVESLASDEETASLRLESSSPPLSDVSVQNDPIFQNGSFPDPFSDLGSGSFAPEFSDFPCFDDFSRDFFLPGLPSFDDGEENVDGMIVQDPFLWNF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00491 208 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Vimu10g00491 208 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vimu10g00491 208 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g00491 208 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vimu10g00491 208 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vimu10g00491 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00491 Vimu-Chr10 3803675 3804301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00491 17 208 AP2-EREBP Transcription Factor Family AT1G19210 48.259 1.12e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g00491 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00491 - - gmx:100802508 310.071