Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00488 ATGTCCAGCTCGTCGGAGTACTCTGAATTTTCCGGCCAGAAATCGGCCAAGTCGCCGGAGAAGTCCAGCTTCTCTCAAACTTGCAGTCTGTTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTCACCCTCGGTATGACATGCAACGCTGAACCATGTGGGTCACCTGAAACTTCTTGTCAATCTGCTACAACTATGAACTTGTTTCCTACCAAGGAAAACAACGTAACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCGCAAGCTTCCTATCGTCCTTCAGAGGAGATTCCAACCTTGGTTAATTCCAGTGCAATTAAGTCTGTGAACAAGGGTGCTAAAACTGCTCAGATGACAATCTTTTATGGAGGACAAGTTGTTGTGTTTGATGATTTTCCTGCTGACAAAGCAAATGAGATCATGTCCTATGCTAGAGGGAAGCCACAGAGCCAGAACAATTCTGTTTTCACTTACACACAGAGCCAGCCTTCATTCCCTCCTAATTTGATCAGAACTTCTGCTGATTCAAGTGCTCCAATTATTCCCTCTGTGACTCTTACCAACTCCATCCATGAACACTCTCAACCATCATCCAGGCCTGTTGTTTGTGCAGATCCACCAATTGCTAGAAAAGCTTCACTCCACCGGTTTCTTTTGAAGAGAAAGGATAGAATTGCTTCCAAAGCTCCATATCAAGTACCAAACGGGCCATCAGCTGAGTCCTTGCCATGGCTTGGGTTGAATGCTACTTCACCTAAAATCTGA 777 0.4505 MSSSSEYSEFSGQKSAKSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCNAEPCGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASYRPSEEIPTLVNSSAIKSVNKGAKTAQMTIFYGGQVVVFDDFPADKANEIMSYARGKPQSQNNSVFTYTQSQPSFPPNLIRTSADSSAPIIPSVTLTNSIHEHSQPSSRPVVCADPPIARKASLHRFLLKRKDRIASKAPYQVPNGPSAESLPWLGLNATSPKI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00488 258 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 241 IPR040390 -
Vimu10g00488 258 SMART tify_2 115 150 IPR010399 -
Vimu10g00488 258 Pfam Jas motif 211 236 IPR018467 -
Vimu10g00488 258 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Vimu10g00488 258 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g00488 258 Pfam tify domain 118 148 IPR010399 -
Vimu10g00488 258 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00488 Vimu-Chr10 3742808 3744786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00488 1 253 Tify Gene Family AT1G19180 42.007 4.70e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu10g00488 tify 6.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00488 K13464 - gmx:100812618 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00488 10 3742808 3744786 Vimu10g00488 10 3742808 3744786 ECH
Vimu7g01527 7 14388767 14390538 Vimu10g00488 10 3742808 3744786 PCT