Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00485 ATGGCTTTAGCAGTTTCCTCCACTGCATTGTCAAGTCTTCCAAACAGGTCTTTTAGCAGAGAAATACATCAAAAGGTTAATTTGGCCGAAAGAACAGGGACATGGTTGGGTTTGAGCAGAAGAACAACTGCAAATGCAACAAAAGGAGTGTCAGCTGTGTGTGAGCCACTTCCTCCAGATAGACCATTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTCGATGGCAGTCTTCCCGGGTCTGATCCAGAGTTGCTAAAGTGGTTCGCTCAAGCGGAACTAGTACATGGAAGATGGGCGATGCTTGCAGTGTTTGGAATTCTGGTTCCGGAGTTGCTGGAAAGAATTGGTTACGTTGACAACTTCAACTGGTACGATGCTGGATCGCGAGAGTACTTTACAGACCACACAACGCTGTTCGTGGCGCAAATGGGCCTGATGGGCTGGGTGGAGGGTCGAAGATGGGCCGACATGCTTAACCCAGGATGCGTTGACATTGAGCCCAAAGTGCCTCACATTACGAACCCGAAGCCCGATGTCGGGTACCCGGGTGGGCTGTGGTTTGACCCGATGGACTGGGGTCGTGGGTCACCTGAACCAGTGATGGTGTTGAGGACGAAGGAGATAAAGAATGGAAGACTTGCAATGCTGGCATTTGTAGGGTTCTGGTTTCAAGCTATTTACGTTGGAGCTGATCCCATTGAAAATTTGATGGCTCACCTTGCTGATCCTGGCCACTGCAACGTTTTCTCGGTAATTTCATTTTCTCTTCCTTCATTAATTTCCTCAAAAAAAAAAAAAAAAAGCTAA 810 0.4827 MALAVSSTALSSLPNRSFSREIHQKVNLAERTGTWLGLSRRTTANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGSDPELLKWFAQAELVHGRWAMLAVFGILVPELLERIGYVDNFNWYDAGSREYFTDHTTLFVAQMGLMGWVEGRRWADMLNPGCVDIEPKVPHITNPKPDVGYPGGLWFDPMDWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYVGADPIENLMAHLADPGHCNVFSVISFSLPSLISSKKKKKS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00485 269 SUPERFAMILY Chlorophyll a-b binding protein 60 253 - -
Vimu10g00485 269 Pfam Chlorophyll A-B binding protein 81 226 IPR022796 -
Vimu10g00485 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 254 IPR001344 GO:0009765|GO:0016020
Vimu10g00485 269 Gene3D Chlorophyll a/b binding protein domain 71 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00485 Vimu-Chr10 3702373 3703375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00485 59 254 Chloroplast and Mitochondria Gene Families AT3G61470 60.194 6.69e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00485 K08908 - gmx:100800374 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00485 10 3702373 3703375 Vimu10g00485 10 3702373 3703375 ECH