Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00483 ATGGCCGCTGTTCGCTTCCACCACCACCTCCTTCTCCTCTTCTTCCACCTCTTCTTCACTCTCTCTTATTCAACCGAAACCCAATCCCTCCTCCGTCTCAAGCAGTCCCTTGTCAACGGCGATCGCTCTCTCTCCTCATGGATCCCCAACGTCTCGCCTTGCTCTGGCACCTGGCTAGGCGTTGTTTGCTTCAACGGAGTCATCACGGGCCTGCATCTCTCCGACTTGGACCTCTCGGGACCAATCGACGTCGACGCCCTGGCGGAGATTCGTGGCCTCAGAACTCTCAGCTTCATCAACAACTCCTTCTCGGGACCAATCCCGGCGTTCAACAAACTGGGCTCAATCAAGTCCCTCCTTTTAACCCAAAACCGTTTCTCCGGACCAATCCCAAACGACTTTTTCGACCCGTTGAACTCCCTCAAGAAACTCTGGCTCTCCGGCAACCGCTTCAATGGCACCATCCCCCAATCCCTAACCCAGCTCGACCTCCTCAAAGAACTCCACCTCGAGTACAACTCCTTCTCGGGCTTAATCCCTAACTTCGGCCAACGGCTAAAATCGCTGGACCTCTCCTTCAACAAACTCGAAGGGCCCATTCCCGGGAGTCTGGCGACGTTCACCGTGGACTCGTTCGTAGGAAACGATGGTCTGTGCGGTAAGCCGTTGGTGAAGGCGTGCGAGGTTTCCGACACGTCATACTCGATGGCGAGCAACGTGGGAGAGGAGGAGTACGGAAGCGGGTGGGGGAGGAAGGTGATCGTGGTGCTGGTGGTGGTGTCGGTGGCGGCGTTGTTGTTTCTGCTTTTGACGCGGAAGCGGCGGGTGGAGTTCACGGCGGTGAGCAGGAACAGCAACGCGGAGGAGGCTGTGGAGGTGCAGGTGGCGAGCGTGAGGGGGAGCGTGGGAGAGAGGAGGGAGAACAAGAGGGGGGACATAGTGATGGTGAACGAGACGAGAGGGGTGTTTGGGCTACAAGACATGATGAAGGCGGCAGCGGAGGTGCTGGGGAACGGTGGGCTGGGGTCGGCGTACAAGGCGGCGATGACGAACGGACTGTGCGTGGTGGTGAAGAGGATGAGGGAGGTGAATAAGATAGGGAAGGAGGTGTTCGACGCGGAGATGAGGCAGTTCGGAAGGATACGACACCGTAACATCATAACTCCCCTGGCTTACCACTACAGGAGGGAGGAGAAGCTCCTGATCACCGAGTACATGCCGAAAGGAAGCTTGTTCTATGTATTGCATGGTGATAGAGGTCTATCACATTCTGAATTGACATGGCCAATTCGTTTGAGGATTGTGAAAGGAATTGCAAGAGGGTTGGGTTTTCTTTACACTGAATTTTCCACATACGATTTGCCTCATGGGAACCTGAAATCTTGCAATGTTCTCCTAAGTGATGACTATGAGCCTCTTTTGAGTGACTATGCATTTCATCCATTGGTGAACCCGAATGTTGCAGTGCAGGCATTGTTTGCCTTCAAAACCCCAGACTTTGTGCAAAACCAAAAAGTTACACAGAAGACAGATGTTTACTGCCTCGGAATCATCATTCTTGAAGTGATCACTGGCAAGTTCCCTGCCCAGTATCACAGCAATGGCAAGGGTGGTACTGATGTTGTTCAATGGGCTCATTCTGCTGTTTCAGAAGGAATGGAAGTAGAATTGATCGATCCAGAGTTGTCATCAAACGACACAAATTCACGCAATCAGATGCTAAAACTTCTCCGTATTGGTGTTGCTTGCACCGAAATTAACTCTGATCAAAGACCAAAAATGAAGGAAGCAATTAGAAGGATAGAGGAGGTACAGGTTTAA 1821 0.5239 MAAVRFHHHLLLLFFHLFFTLSYSTETQSLLRLKQSLVNGDRSLSSWIPNVSPCSGTWLGVVCFNGVITGLHLSDLDLSGPIDVDALAEIRGLRTLSFINNSFSGPIPAFNKLGSIKSLLLTQNRFSGPIPNDFFDPLNSLKKLWLSGNRFNGTIPQSLTQLDLLKELHLEYNSFSGLIPNFGQRLKSLDLSFNKLEGPIPGSLATFTVDSFVGNDGLCGKPLVKACEVSDTSYSMASNVGEEEYGSGWGRKVIVVLVVVSVAALLFLLLTRKRRVEFTAVSRNSNAEEAVEVQVASVRGSVGERRENKRGDIVMVNETRGVFGLQDMMKAAAEVLGNGGLGSAYKAAMTNGLCVVVKRMREVNKIGKEVFDAEMRQFGRIRHRNIITPLAYHYRREEKLLITEYMPKGSLFYVLHGDRGLSHSELTWPIRLRIVKGIARGLGFLYTEFSTYDLPHGNLKSCNVLLSDDYEPLLSDYAFHPLVNPNVAVQALFAFKTPDFVQNQKVTQKTDVYCLGIIILEVITGKFPAQYHSNGKGGTDVVQWAHSAVSEGMEVELIDPELSSNDTNSRNQMLKLLRIGVACTEINSDQRPKMKEAIRRIEEVQV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00483 606 SUPERFAMILY Protein kinase-like (PK-like) 334 601 IPR011009 -
Vimu10g00483 606 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vimu10g00483 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 605 IPR046959 -
Vimu10g00483 606 Gene3D Ribonuclease Inhibitor 185 230 IPR032675 -
Vimu10g00483 606 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Vimu10g00483 606 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00483 606 Pfam Protein kinase domain 334 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00483 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 83 179 - -
Vimu10g00483 606 Gene3D Transferase(Phosphotransferase) domain 1 406 606 - -
Vimu10g00483 606 SUPERFAMILY L domain-like 28 207 - -
Vimu10g00483 606 Pfam Leucine Rich Repeat 185 204 IPR001611 GO:0005515
Vimu10g00483 606 Gene3D Phosphorylase Kinase; domain 1 299 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00483 Vimu-Chr10 3698712 3700532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00483 1 604 Receptor kinase-like Gene Family AT3G42880 48.983 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g00483 Pkinase 9.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00483 - - gmx:100790660 879.782