Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00478 ATGGTGGTGGTGGAGGATGCCAAGGAATCTTTGTTGCTGCAAAGCACGATCGCGGAATCTTTTTTTGCAGTAACAACATCGTATTCCTTTGTTTATGCAGTAGAAGAGAGAAAAACGCAGGATTGCGAATTTCTGAAACTCCGCGAAGCCATGGCACGTGAGTTCAACGATGTTGCAGCAACGCTCCAATCCATACGCTACAACCGCGGTTCCCTCCACCTTCTCGACCAGGTCCTCTCTTCTCTTTATATTCCTCTTCCCTTCGCCGATTTCAGAAAGCTCCCTCTGGAGACAACTTACTTGGAAATTCGGGATTCAACAGATGGCTGGAATGCCATCCAGGATATGGTGGTCCGAGGAGCACCCGCTATTGCGATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGACGGTTTCAATGGGTCAGCTGGTGAAGCTGTTTCCCTCCTGCAGAATAAATTAGAGTATCTTGTCTCAAGTCGGCCAACTGCAGTGAATCTATCGGATGCTGCGGGAAAACTCAAAGAAGTCGTATCAAATGCTGCTGCTACCACTTCAGAGGGCAGGAGTGTTTTCCAGGCATTTATAGAAGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATCGAGCTATTGGCTCTTACGGAGCTAGCTGTATTCAGCAACAAACTGGGAAACAAAAGCTTTCTGTTTTGACGCATTGCAATACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTTTGGGTGTGATCCGTGCACTTCACAGTGCAGGAGTTCTAGAAAGGGCTTATTGCACTGAAACACGCCCGTTTAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTGCAGCTGCACTAATGAAAGCAGGAAGTGTGGATGCTGTTGTTGTTGGGGCTGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTCCGCAAAGTTTCATAATGTACCTTTTTATGTTGCTGCCCCCCTCACCTCCGTCGATCTATCACTTTCTTCTGGACAAGAAATTGTAATTGAGGAGAGGTCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTTGGGGAGCAGGTTGCTGCATCGGGAATTTCTGTGTGGAACCCAGCTTTCGATGTTACTCCTGCTAGTCTAATATCTGGGATCATCACGGAGAAGGGTGTCATTACGAAGACTTCTGATGATGATGCATTCGACATCAAAGCTTTCGTAGATTTGAAAAGTATTGATGTTTGGAGAGAGTGTTGTGACCGGACATGTCCTAAAAAAACTGATCTGGACATAGTTATGGTTAGTAAACAAGTCAATAAGAAATTCATGGAAACCGTGCCTTGTGTGGCTAAAATGGAGTTGAAGGGATTTTAA 1449 0.4576 MVVVEDAKESLLLQSTIAESFFAVTTSYSFVYAVEERKTQDCEFLKLREAMAREFNDVAATLQSIRYNRGSLHLLDQVLSSLYIPLPFADFRKLPLETTYLEIRDSTDGWNAIQDMVVRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSLLQNKLEYLVSSRPTAVNLSDAAGKLKEVVSNAAATTSEGRSVFQAFIEAAEVMLEDDVASNRAIGSYGASCIQQQTGKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAGSVDAVVVGADRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKTSDDDAFDIKAFVDLKSIDVWRECCDRTCPKKTDLDIVMVSKQVNKKFMETVPCVAKMELKGF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00478 482 FunFam Methylthioribose-1-phosphate isomerase 231 429 - -
Vimu10g00478 482 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 59 432 - -
Vimu10g00478 482 FunFam Methylthioribose-1-phosphate isomerase 60 265 - -
Vimu10g00478 482 Gene3D - 266 431 IPR042529 -
Vimu10g00478 482 SUPERFAMILY NagB/RpiA/CoA transferase-like 62 421 IPR037171 -
Vimu10g00478 482 Gene3D - 83 265 IPR027363 -
Vimu10g00478 482 Pfam Initiation factor 2 subunit family 118 418 IPR000649 GO:0044237
Vimu10g00478 482 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 62 428 IPR005251 -
Vimu10g00478 482 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 104 419 IPR011559 GO:0044249
Vimu10g00478 482 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 89 419 IPR005251 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00478 115 431 Eukaryotic Initiation Factors Gene Family AT2G05830 77.987 1.25e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00478 K08963 - gmx:100799311 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00478 10 3662066 3665350 Vimu10g00478 10 3662066 3665350 ECH