Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00468 ATGACAGGTCATTTGACAGCAATGAGTGATGTGTATAGTTTTGGGGTAGTGCTGTTGGAGTTGCTGACAGGGAGAAGGTCAGTGGACAAGAACCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCAATGCTGAATGATTCAAGGAAACTGAGTAGGATAATGGACCCTAGACTTGAAGGGCAGTATTCAGAAATGGGGACCAAAAAAGCAGCTGCATTGGCTTACCAATGTCTGAGCCACAGACCCAGGAGCAGACCCTCCATGAGTACAGTGGTTAAGATCCTTGAGCCACTTCAGGATTTTGATGACATTCCAATGGGAACATTTGTCTACACTGCTCCACAAGATCATAACAATGAAGTGCATAGGGATGCAAAGGATCAATGTGAAACACCTAGAAGGAAGGAAAACAACAGCAATGGCCAACACCATCGCAGGAACCACAACCTTAACAGACATCATCCTCTCAAATCCCCAAAGAGCCCCAAGCCACAACATTTACGTTCACCGAATGATCACAACAACAAACACAGAAATGGTAGACGAAGTGGATCAAACTCTCCTCCAGGAATCATTACCTAA 591 0.4585 MTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLSRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKILEPLQDFDDIPMGTFVYTAPQDHNNEVHRDAKDQCETPRRKENNSNGQHHRRNHNLNRHHPLKSPKSPKPQHLRSPNDHNNKHRNGRRSGSNSPPGIIT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00468 196 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00468 196 MobiDBLite consensus disorder prediction 115 196 - -
Vimu10g00468 196 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Vimu10g00468 196 MobiDBLite consensus disorder prediction 120 141 - -
Vimu10g00468 196 PANTHER OS01G0588500 PROTEIN-RELATED 1 102 - -
Vimu10g00468 196 MobiDBLite consensus disorder prediction 142 164 - -
Vimu10g00468 196 Pfam Protein tyrosine and serine/threonine kinase 3 98 IPR001245 GO:0004672|GO:0006468
Vimu10g00468 196 SUPERFAMILY Protein kinase-like (PK-like) 3 117 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00468 Vimu-Chr10 3567558 3568312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00468 1 101 Receptor kinase-like Gene Family AT3G58690 54.455 5.35e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu10g00468 PK_Tyr_Ser-Thr 2.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00468 - - gmx:100797003 311.227