Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00457 TTGATGATGAATGGGAGGAACAGGTTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTACAAGTACATGGCTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAAGGAGCTACTTTGATTCCCCTCTGTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTGCAAATCTTTGACAAAAAGGGTTGGTTGTGTGCAGTTGGATGGAACTACCTGCAGATGGGTTTGGGGAGAAAGATAGACCCTGAGCCTGGTAGGTGTAGAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCGTCAACAAACACAAATGCTTCAACTCAACAACCAATCTCATCATCTATCACCAAACTCAATACTCTTTCTCCTCTTGCATCATCTGAATCACACCAACACCACCCTCCACACTATGCCTCCTTTCTCTATCACCACCCTCCATCATCAAGGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGTATGCATACGGAGAGAAGGAAGAGGTGGATGAGCACGCTTTCTTCACAGAGCCGTGTGGTATAATGAAAAGCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGACCATGAGCTCCTCCTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTATTCTTGCTTGCAACTTCAAAGCCACTCAAAGCAGCAGGAGCAACAAGATCAGGGTGGTTGCTACATGCTAGGTGGAGGCCAACTTGGAAAAGAAGAGCCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGACAAGGATCTTGGCTCGATTTGGATGACAAATCCTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCACGATTTTCCAGCCTTCAGTTCCAGAACCCACCACGGTAATTGCTGA 1086 0.4604 MMMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHLQIFDKKGWLCAVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPSTNTNASTQQPISSSITKLNTLSPLASSESHQHHPPHYASFLYHHPPSSRSFEDNSAPLFLDTGSCSQSNTDCRYAYGEKEEVDEHAFFTEPCGIMKSFSASSMDDSWQLTPLTMSSSSSSTKQRSSFGLSNDYSCLQLQSHSKQQEQQDQGGCYMLGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSSHDFPAFSSRTHHGNC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00457 361 MobiDBLite consensus disorder prediction 121 154 - -
Vimu10g00457 361 PANTHER GROWTH-REGULATING FACTOR 5 9 348 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu10g00457 361 Pfam WRC 91 133 IPR014977 -
Vimu10g00457 361 Pfam QLQ 10 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu10g00457 361 ProSiteProfiles WRC domain profile. 90 134 IPR014977 -
Vimu10g00457 361 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu10g00457 361 MobiDBLite consensus disorder prediction 133 154 - -
Vimu10g00457 361 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00457 Vimu-Chr10 3434447 3435739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00457 8 142 GRF Transcription Factor Family AT3G13960 53.459 3.17e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu10g00457 WRC 7.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00457 - - gmx:100814271 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00457 10 3434447 3435739 Vimu10g00457 10 3434447 3435739 ECH
Vimu7g01486 7 14065771 14067824 Vimu10g00457 10 3434447 3435739 PCT