Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00455 ATGGAAACGAAGAACTGCTGTGAAAAAGAAGGAGCATGGTCTTCTGACGAAGACGAAATCCTCTTGAACTATGTTCAACTCACTGGAGAAGGAAATTGGACAGACCTTCCCCAAAGAGCTGGGTTGAAACGATGTGGTGAGAGTTGCAAACATCGATGGATGAACTATCTGAAGCAAAGCATCCCCAGATACAACTTTTCTTGGGATGAACAAGAACTCATCATCAAACTGCATAAACTCTTGGGGAATAGATGGTCAATGATTGCAGGAAGATTGCCAGGACGCAATGAAGATGAGATAAAGAAGTACTGGAATACGTATTTGAGCAAGAAAGTAGAAGAAAAGAAGAATGTGAGAAGAAGTAGTAGCATGTCCAGTGTTGAATCTCCATGGTTGTCTGAAAATGAGCATGCTATGAATTCCATGGAGTCTCCAAACCCTGTGATAGTTAGACCTAAAGTTTTTAGGTTAACCAAGCCTGTGGTGCCAAGACTGGTAGGTACCTGA 507 0.4201 METKNCCEKEGAWSSDEDEILLNYVQLTGEGNWTDLPQRAGLKRCGESCKHRWMNYLKQSIPRYNFSWDEQELIIKLHKLLGNRWSMIAGRLPGRNEDEIKKYWNTYLSKKVEEKKNVRRSSSMSSVESPWLSENEHAMNSMESPNPVIVRPKVFRLTKPVVPRLVGT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00455 168 SMART sant 9 59 IPR001005 -
Vimu10g00455 168 SMART sant 62 110 IPR001005 -
Vimu10g00455 168 CDD SANT 65 108 IPR001005 -
Vimu10g00455 168 Gene3D - 10 62 - -
Vimu10g00455 168 CDD SANT 12 57 IPR001005 -
Vimu10g00455 168 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vimu10g00455 168 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Vimu10g00455 168 Gene3D - 65 131 - -
Vimu10g00455 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vimu10g00455 168 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Vimu10g00455 168 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Vimu10g00455 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Vimu10g00455 168 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vimu10g00455 168 FunFam MYB-related transcription factor 9 62 - -
Vimu10g00455 168 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00455 Vimu-Chr10 3405962 3406654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00455 2 112 MYB Transcription Factor Family AT3G13540 55.652 4.51e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g00455 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00455 K09422 - gmx:778159 221.861