Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00450 ATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAGCCACCCTTGGATTCAGATTTACCAAGTGTGAGAGCTATAGCAGATAACACTGTGGAGAATTTGGCCAGGAGTAATAATACTAGTAATACTATTAGTAACGCTGCTGCTCAAAATGCAAGTCAAGATAAAGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCTGTTTACAAAGGCCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGCCGCTACAATAATGCACGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTCTTTTGGAATCAACTTCAACAGTAGAGTTGTGCCCGGATGAGGATGATTCTATACCTAGACAGCAGTTCTCATTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACACTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGCGAATTTTGCAATAGGGAAGGGCAACAGTTGCAAGAGATGGTAGACTCGGGGTTTTTCCCTATTTTAGCTGTCAAAGCGGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCATTCAATTTCTAGGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGCAAAACTGTATCTCAAATCAAGGATGAAGGTCTGGGACGATCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATATCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAATGCAATAAAAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAGGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACAGGAGTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAGCATGAACAACAGGACGATGAGAGGTTTGGAGAAATACTCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAATTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 1626 0.4133 MVLNMETIIADFEIIGNPKPPLDSDLPSVRAIADNTVENLARSNNTSNTISNAAAQNASQDKAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDTSGRSVELTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASHSISRDVIPGGTKNEVRKTVSQIKDEGLGRSDKPDWITIRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGTGVTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFGEILKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00450 541 Pfam Replication protein A OB domain 218 322 IPR031657 -
Vimu10g00450 541 SUPERFAMILY Nucleic acid-binding proteins 94 208 IPR012340 -
Vimu10g00450 541 SUPERFAMILY Nucleic acid-binding proteins 361 538 IPR012340 -
Vimu10g00450 541 NCBIfam replication factor-a protein 1 (rpa1) 38 537 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu10g00450 541 CDD RPA1_DBD_C 364 537 IPR047192 -
Vimu10g00450 541 CDD RPA1_DBD_A 97 200 - -
Vimu10g00450 541 Gene3D - 206 346 IPR012340 -
Vimu10g00450 541 FunFam Replication protein A subunit 94 203 - -
Vimu10g00450 541 FunFam Replication protein A subunit 207 345 - -
Vimu10g00450 541 Gene3D - 93 204 IPR012340 -
Vimu10g00450 541 FunFam Replication protein A subunit 346 538 - -
Vimu10g00450 541 PANTHER REPLICATION FACTOR A 1, RFA1 108 516 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu10g00450 541 Pfam Replication factor-A C terminal domain 380 531 IPR013955 -
Vimu10g00450 541 Gene3D - 348 539 IPR012340 -
Vimu10g00450 541 CDD RPA1_DBD_B 229 336 - -
Vimu10g00450 541 Pfam OB-fold nucleic acid binding domain 109 190 IPR004365 GO:0003676
Vimu10g00450 541 SUPERFAMILY Nucleic acid-binding proteins 212 339 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00450 Vimu-Chr10 3370920 3372545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00450 1 533 Core DNA Replication Machinery Family AT2G06510 71.743 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00450 K07466 - gmx:100792409 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00450 10 3370920 3372545 Vimu10g00450 10 3370920 3372545 ECH