Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00448 ATGGAAGAAGAAAGAAGCGTGGCAGACAAGAAAGTGGCAAAGAACGAGGTGGTTCTACGAATTTCAGACTCTGAAGGAGCCATGAATGCAGAAATAAAAGGTTCTGGAAGTTTTCCAGTAGCTGAAAGCAGCTCCCTTTCTCCTCAGCACAAGACCCAGATAAGTAAAAGGTTTAGAGATTCTGGTGGTGAAATCACAGAGCCTCTGAGAAACAAGGATCAAGTTTCCACAAAGTGGATGACAACTACAAAGAGGTTGATCGGTCAGTCGGAATTTTCGAAGCCAAAGTCCAGAATGGTGGATCCACCGTGTCCAAGATTTGCAAAATTTGTCGAAGAAAAGGTTCGAATGACAAGTTCATTTGCATGGAATTCTCGTAACAGGAATGTTCCCGAAGCAACTACAGACAATCCAAGAACGCCCTTGCTTGGGACTCCCGCTGAAGAAGATGATGACGATGACGAGGTGTACATGATTGCAAATTTTGACGTGGCCAAGAGATCTGGTAGGAAGTGGAGAATTTTTGAGTTGTTTGCTTTTGCTTTCATCACGGGGTTTTTTATTGCAAGTTTGTCTGTTACTCCGTTGCAAAAAAGAGAGCTTTGGGGTTTGAATATGTGGAAATGGTGTGTATTTATATTGGCTATCCTCTGTGGTAGACTGGTTACTGAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAAAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTGAGTTTGGTTCTTCTGACATGGGATATGCTTTTCAGCCCAGAAGTGGAGAGAACCAGTAAGGTTGGTAGGATTCTTAATTACATTGCTCTGACCCTTGCTTCTTGTCTTATTGGAGCAGCTTTGTGGTTAGCCAAAACATTGTTGATAAAGCTTCTAGCTTCAAGTTTTCAATCTACAAGATTCTTTGACAGGGTGCACGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGCCCTCCCTTGATGGAGATGGCTGAAAAGGTTGGTACAACTTCAAATAGCGACCAACTTAGTTATAAGACCATGGTTAATAAGAAGGAAGGGGAGAGAGGACAAGTAATTGATGCAGACAAGCTCAAGAAAATGACACAAAAGAAAGTTTCTCCTTTGACTATGAAAGGGTTGATTAATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATGCACAGGATGATGAAGAGAATGAACAGAAAGATAATGAAATTAATAGCGGGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTTATGAACGTAGCCAAGCCAGGACACAAGTACATTGAGATAGATGACCTCTTGCGATTCATGAAAATTGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAAGTCTACCTTGGACGCAAATCGCTCATACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATACTTGCTTCTGCAGTTGTGGTTATTGTGACCCTTATTGTGTGGCTTCTTTTAATGGGTGTCTTAACAACTGAAGTTCTTGTCTTTATATCATCCCAGCTTTTACTTGTGGGTTTCATGTTTGGCAACACTGCCAAGACTGTGTTTGAAGCTATTATATTTGTTTTTGTGGTGCACCCGTTTGATGTTGGTGATCGATGCGTCATTGATGGCGTTCAGATGGTTGTAGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCAGTTCTCTCAAACAAGCCAATCAGTAACTTCAACAGGAGTCCAGAAATGAGTGATGCTATTGAATTTGTTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGGCAAAGTTGAAAGTAGTTTTAGCAAAAAGTGATCATAAATCTAAATTTGCGGTTCTTTTCCTTCCATTGTTGCCTCAACACTGGAATACCCAATACGACGTATTGGTTAATGGTATTGAGAATGTGAATAAGATGAAAATGGCTGTGTTTGTTACTCACACCATAAATTTTCAGAACTTTGGGGATAGGAGCAGCCGAAGATCGGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATGTCAGCTATGTAAGAGGTATTCTAGATCAGTATGAGATTTCTAAGCTACTTAAGGGTCCATTTGATATGGCAAGAGGATGCTTGGTTATAAAAGCTTCACTTGATGACATCCTTCCAAAGAGAAATAGAGGGAGACGAGGAGTGAATACTGACAACGAGAAGTGTCAGTCATCGAAGGTCGACGACACTTCCAGTGTCGGTAACGCCTTTGGCGACACTTTTGTTAAACCTTCTTCAAGTTTCAGCTTCAATGTTGCAGAAAACGGTTGTTGCACTCCTAGAAATCTAAGACCTGCTTTTTGGAGAAGTCAGAAACTAAAAAGTTGTCACCTTGACATGGAAGAAGAAGGAGGCGTGGCAGACAAGAAAAAGACAAAGAACGAGGTTGTTCTACGAATTTCAGACACTGAAGAAGCCATTACTACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACCCAGATAGGTAAATGGTTTAGAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCGCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAAGGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAAAAAGAATTTTCCTGACGCGACTGTTGTCACCCCAAGAAGCCCCTTCCTTTGGACACCAAGGGAAGAAGATGATGATGACGAAGAAGTGTACAAGGCTGCAAATGTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTATTGCATGCTTGACTGTGAATGAATTGCAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGTTTTGGTTGTCCTCTGTGGTAGACTGGTAACTGAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTGAGTTTGGTTCTTCTGACATGGGGACTGCTTTTCAACCATGGAGTGGAGAGAACCAAAAAGGTTAATAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTGTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGACTTCAAACAGTGGGCAACTAAGTTTTAAGACCCTGAATAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAAAAAGTTTCTGCTTGGACTATGAAAGGTTTAATTAATGTGATAAAGAATTCTGGGTTGTCTACCATCTCCTATGCGCCAGATGAATATGAGAATGACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACAATTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAGTTACTTCACATAGTCTATATAGTGTTTACTGAGAGCATTTACATAGTAAAAGTCTACTTTGAACGCCGGTCGCTCGTACATTCACTAAATGATACCAACACAGCTGTCGATGACTTGAATATGCTTGCTTCTTTCCTTGTGCTTATTGTGATCCTTATTGTGTGGCTTCTTATAATGGGCTTCTTGACAACCGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAGTTCAGATGATTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAACGAAAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACTTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCAACATTGGCGTCCCAACCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGTTGAAAATGGCTCTATATGTTACTCATACCATAAATTTTCAAAACTATGGGGAGAAGAGCAACCGAAGATCCGAATTAGTCCTGGAGTTAAAGAAAATTTTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTTAGTTATGTAAGAAGTGAAATTGGTTTGAACACTGTATTTCCTAATGAATTAGCTGAGGCCAGGGAAGAAAGAAAGATGATGTTTAATGGCACTGTTCTGAGTAAGATCACTCCAAGGGCTCTTGCTTAA 4935 0.3949 MEEERSVADKKVAKNEVVLRISDSEGAMNAEIKGSGSFPVAESSSLSPQHKTQISKRFRDSGGEITEPLRNKDQVSTKWMTTTKRLIGQSEFSKPKSRMVDPPCPRFAKFVEEKVRMTSSFAWNSRNRNVPEATTDNPRTPLLGTPAEEDDDDDEVYMIANFDVAKRSGRKWRIFELFAFAFITGFFIASLSVTPLQKRELWGLNMWKWCVFILAILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWDMLFSPEVERTSKVGRILNYIALTLASCLIGAALWLAKTLLIKLLASSFQSTRFFDRVHESIFHQYILKTLSGPPLMEMAEKVGTTSNSDQLSYKTMVNKKEGERGQVIDADKLKKMTQKKVSPLTMKGLINVIRSSGLSTISYAQDDEENEQKDNEINSGWEAKAAAYRIFMNVAKPGHKYIEIDDLLRFMKIEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYLGRKSLIHSLNDTNTAVDDLNILASAVVVIVTLIVWLLLMGVLTTEVLVFISSQLLLVGFMFGNTAKTVFEAIIFVFVVHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLSNKPISNFNRSPEMSDAIEFVVDVSTSIESIGALKAKLKVVLAKSDHKSKFAVLFLPLLPQHWNTQYDVLVNGIENVNKMKMAVFVTHTINFQNFGDRSSRRSELVLELKKILEDLNIKYHLLPQEVHVSYVRGILDQYEISKLLKGPFDMARGCLVIKASLDDILPKRNRGRRGVNTDNEKCQSSKVDDTSSVGNAFGDTFVKPSSSFSFNVAENGCCTPRNLRPAFWRSQKLKSCHLDMEEEGGVADKKKTKNEVVLRISDTEEAITTKEQRVSRSFPVAENSSLSPQHNTQIGKWFRDSHGEITECNGQVSAELVTTTKRLMGRSEFSKPKSRMVEPRCPKDANFVEEKAQKTSSPARNSPKKNFPDATVVTPRSPFLWTPREEDDDDEEVYKAANVEVSKRSGKKWRVVELFAFACIVGFFIACLTVNELQKRLIWGLELWKWCVLVLVVLCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLLFNHGVERTKKVNKILNYITRALASCVLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWTSNSGQLSFKTLNNENEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKNSGLSTISYAPDEYENDQKDNEINSEWEAKAAAYRIFGNVAKPGHNYIDKDDLLRFMKNEEVENLLPLFEGAVETRRIKRKSLKNWLVKLLHIVYIVFTESIYIVKVYFERRSLVHSLNDTNTAVDDLNMLASFLVLIVILIVWLLIMGFLTTEVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSVESIGALKAKLKVYLESRPQHWRPNHNVVVKDIENVNKLKMALYVTHTINFQNYGEKSNRRSELVLELKKIFEDLNIKYHLLPQEVHLSYVRSEIGLNTVFPNELAEAREERKMMFNGTVLSKITPRALA 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 962 988 - -
Vimu10g00448 1644 SUPERFAMILY Sm-like ribonucleoproteins 1436 1495 IPR010920 -
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 53 67 - -
Vimu10g00448 1644 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 861 1605 IPR016688 -
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 38 52 - -
Vimu10g00448 1644 Pfam Mechanosensitive ion channel 519 735 IPR006685 GO:0016020|GO:0055085
Vimu10g00448 1644 Pfam Mechanosensitive ion channel 1388 1592 IPR006685 GO:0016020|GO:0055085
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 127 146 - -
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 127 141 - -
Vimu10g00448 1644 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 30 67 - -
Vimu10g00448 1644 Gene3D - 575 624 IPR023408 -
Vimu10g00448 1644 Gene3D - 1446 1495 IPR023408 -
Vimu10g00448 1644 FunFam Predicted mechanosensitive ion channel 575 624 - -
Vimu10g00448 1644 FunFam Predicted mechanosensitive ion channel 1446 1495 - -
Vimu10g00448 1644 MobiDBLite consensus disorder prediction 968 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00448 Vimu-Chr10 3353902 3365516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00448 63 746 Mechanosensitive Ion Channel Family AT5G12080 46.495 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00448 K22048 - gmx:100777332 1139.02