Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00447 ATGGGTGATGTTCTAAGCCCTTTCACAGTTTCATCTCCTCCTCCAACCTCTTCCTCTTCCGACAACAACAACAGCATGCCCATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTGCTGGCCGTATACAACGTCTTCCTCCTGAGACGCAGCCACTCGCGGTCGCAGCAGCCTCCGGGGTCGAGTCCCAATGGTGTGGGAACAAGAATTGAAGGGGTTTCGGAGATAACGAGGAGCATGGAGAACCGACAGAGAGAGTTGTTGTCGAGCTTCAAGTACAAGAGAGAAGAGGTGGCAAAAGAAAAAGAAGAGTTGGAAGATTTTGAGTGCCCCGTTTGCTTATCGGTTTACGAAGAAGGAGAAGAAGTTAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTATTCTCACTTCGATTGTCCCATTTGTAGAACACCCGTTCTCGTCGGCCATCTCTCTCCGGTCGACGCCTTCATTGAATCCGGCGGCATCTCGTAG 531 0.5085 MGDVLSPFTVSSPPPTSSSSDNNNSMPMLYYGLVVVGTAAIVLAVYNVFLLRRSHSRSQQPPGSSPNGVGTRIEGVSEITRSMENRQRELLSSFKYKREEVAKEKEELEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHFDCPICRTPVLVGHLSPVDAFIESGGIS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00447 176 SUPERFAMILY RING/U-box 103 160 - -
Vimu10g00447 176 CDD RING-H2_EL5-like 112 155 - -
Vimu10g00447 176 FunFam RING-H2 finger protein ATL1 71 160 - -
Vimu10g00447 176 MobiDBLite consensus disorder prediction 9 23 - -
Vimu10g00447 176 Pfam Ring finger domain 112 155 IPR001841 -
Vimu10g00447 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 158 IPR044675 -
Vimu10g00447 176 SMART ring_2 113 154 IPR001841 -
Vimu10g00447 176 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g00447 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Vimu10g00447 176 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00447 Vimu-Chr10 3340500 3341030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00447 14 158 C3H Transcription Factor Family AT1G04360 30.625 8.74e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00447 - - gmx:102668279 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01479 7 13999018 13999491 Vimu10g00447 10 3340500 3341030 PCT