Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00445 ATGCTCACGTGCATAGCACGTTCCAAGAAACTCGACTCGGAGAGCGACGATCCGAGTTCGCGGGGGGCCAAATCGCTAACGTGTCAGCTGAAGGAGATGGCACTGAAGGCTTCGGGATCGTACAAGCAGTGCGGTCCTTGCGCGCCGCCGCAGAGTCGATTGAGTCGCGGTGGCGAGTCCGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCTCGGTTGAAGGGGATTTCGAGCGGCGAGGGGACGCCGAGCTCCAGCGGGAGGAGAATGGTGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTGATCACGTTCGTATCGCTTCCGCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTCGCGATATATTTAACAAATGGCAAGCTCAGAGATGGTGGGCAGAGAATTACGACAAGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGACAAGCTATTCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGCTCAAAGCGTGAATCAATAGAAGAAATCCCTGTGACACCTCCGCTGAGCAGGGAAAGGCCACCGTGTAATATATTCCGTGGAGGAGGAGGAGGAGTGGCAATGGGGTACTCATCCTCTGATTCGTTCGATCAGCATTCAATGCAATCCCGGCATTACTATGATCCGAGTGGTGTGAACTCAACCCCGAAGGTGTCGACCATTAGTGCTGCTGCGAAGACAGATATCTCATCATCAATGGATGCTGATGCTTCTATCAGAAGTAGCTCATCTAGGGAAGCTGATCGCTCCGGCGATTTATCAATCAGTAATGCCAGTGACCTCGATGCTGAATGGGTCGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGTGGCAAAAGGGAGCTCAGACGAGTAAGGTTCAGGTATGACATTTCAGTAGCAATTGTTTTGTTCATGCTCATAAGTAATGAGTGTAAATTACATAGATCTTAA 1029 0.5277 MLTCIARSKKLDSESDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCAPPQSRLSRGGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRMVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAIPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNIFRGGGGGVAMGYSSSDSFDQHSMQSRHYYDPSGVNSTPKVSTISAAAKTDISSSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFRYDISVAIVLFMLISNECKLHRS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00445 342 MobiDBLite consensus disorder prediction 219 242 - -
Vimu10g00445 342 MobiDBLite consensus disorder prediction 256 282 - -
Vimu10g00445 342 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 320 IPR044532 -
Vimu10g00445 342 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Vimu10g00445 342 Pfam Transcription factor regulating root and shoot growth via Pin3 290 320 IPR013591 -
Vimu10g00445 342 MobiDBLite consensus disorder prediction 59 78 - -
Vimu10g00445 342 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Vimu10g00445 342 MobiDBLite consensus disorder prediction 39 91 - -
Vimu10g00445 342 MobiDBLite consensus disorder prediction 170 203 - -
Vimu10g00445 342 ProSiteProfiles BRX domain profile. 290 342 IPR013591 -
Vimu10g00445 342 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g00445 342 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00445 Vimu-Chr10 3318820 3323247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00445 1 319 Major Intrinsic Protein MIP AT1G31880 40.997 1.20e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00445 - - pvu:PHAVU_009G229100g 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00445 10 3318820 3323247 Vimu10g00445 10 3318820 3323247 ECH
Vimu7g01475 7 13978857 13981708 Vimu10g00445 10 3318820 3323247 PCT