Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00439 AAGGAGAACCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAGTCAGTGGCTTTCTACTTTGGAGCGAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTATTCACTATGATTAATGATCTGCCTACTATATTCGAGGTCGTAACTGGATCTGCAATGAAACAGGCAAAGGAGAAGTCATCAGACCGCAACAGCAGCAAATCAAAGTCCGGTTCAAAACGAGGATCTGAATCTGTGAAGTATGTAAAACAAGAAGTTAAGGAGGAGGAGGTATTGGACGAAGAAGTAGACGAGGAACACGGAGAGACCTTGTGTGGCGCTTGTGGGGAGAACTACGCATCCGATGAGTTCTGGATTTGTTGCGACATATGCGAGAAGTGGTTTCATGGCAAGTGTGTGAAAATCACTCCTGCCCGGGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 612 0.4526 KENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSGSKRGSESVKYVKQEVKEEEVLDEEVDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00439 203 ProSiteProfiles Zinc finger PHD-type profile. 147 199 IPR019787 -
Vimu10g00439 203 Pfam Alfin 1 95 IPR021998 GO:0006355|GO:0042393
Vimu10g00439 203 MobiDBLite consensus disorder prediction 100 138 - -
Vimu10g00439 203 FunFam PHD finger alfin-like protein 142 198 - -
Vimu10g00439 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 198 IPR013083 -
Vimu10g00439 203 Pfam PHD-finger 150 199 IPR019787 -
Vimu10g00439 203 PANTHER CPG BINDING PROTEIN 1 202 IPR045104 GO:0006355|GO:0042393
Vimu10g00439 203 SMART PHD_3 149 197 IPR001965 -
Vimu10g00439 203 CDD PHD_AL_plant 149 199 IPR044104 -
Vimu10g00439 203 MobiDBLite consensus disorder prediction 101 134 - -
Vimu10g00439 203 ProSitePatterns Zinc finger PHD-type signature. 150 196 IPR019786 -
Vimu10g00439 203 SUPERFAMILY FYVE/PHD zinc finger 142 201 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00439 Vimu-Chr10 3288102 3289810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00439 1 202 Alfin-like Transcription Factor Family AT3G42790 72.549 2.20e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu10g00439 Alfin 1.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00439 K26274 - gmx:100170699 346.28