Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00431 ATGAAGAAAGGGAGCTTAAGCTCCGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTACCAAGTTTTTGTCTGAGTCTGAAAGTGAAACGTTCAAGGCGGGGGACTTGCTTGTCGACAAGGAAGGTGTTAGAGTTGTTTCTGAGAAGGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCACAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTACCATAATGGTGTCATATCAATCATATTTGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAAAAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCACAGGGACTTAAAACCTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCACTACTAACCAGAGTGGCTACGACTACAAAAGTGACATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCACCAGATCAACGTGAAGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGAGATAGACCGTCTGCTCGTGACCTTATAAACCATCCTTTTATCAAATTGTATGAGGACTTGAATGTGGATCTTTCAACTTATTTCTACAACGCAGGATCTACACTTGCAACCATATAG 1077 0.402 MKKGSLSSGLKLTVPASDWGSFTKFLSESESETFKAGDLLVDKEGVRVVSEKEVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIHRQIALELKINQSAQCPYVVVCYQSFYHNGVISIIFEYMDGGSLEDLLNKVKKIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIIMENTSGQANTFIGTHSYMSPERITTNQSGYDYKSDIWSLGLILLKCATGQFPYTPPDQREGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKLYEDLNVDLSTYFYNAGSTLATI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00431 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vimu10g00431 358 SUPERFAMILY Protein kinase-like (PK-like) 70 342 IPR011009 -
Vimu10g00431 358 FunFam Mitogen-activated protein kinase kinase 6 153 353 - -
Vimu10g00431 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Vimu10g00431 358 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Vimu10g00431 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vimu10g00431 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00431 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 21 336 - -
Vimu10g00431 358 CDD PKc_MAPKK_plant_like 70 338 - -
Vimu10g00431 358 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Vimu10g00431 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00431 358 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00431 Vimu-Chr10 3228341 3232299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00431 28 355 MAP Kinase Kinase Gene Family AT4G26070 64.329 9.69e-162 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vimu10g00431 Pkinase 6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00431 K20603 - gmx:100789241 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00431 10 3228341 3232299 Vimu10g00431 10 3228341 3232299 ECH
Vimu7g01460 7 13872911 13876807 Vimu10g00431 10 3228341 3232299 PCT