Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00430 ATGAGGTACTTAAAACCATGGGTAATTCCAGAGCCAGAAGTGAAGTGTATCCAAAGAGACAAAAACGATGAGTGCCTCATTCTGGCCAGTGATGGATTATGGGATGTCATGACAAATGAAGAAGCCTGTGACTTTGCAAGAAGGAGAATCCTTATTTGGCATAAGAAGAATGGCAACAACTCATCATCACAACAAGGCCAAGGACCTGACCCTGCAGCTCAGTATGCTGCAGAGTATCTATCTAGACTTGCCCTTCAAAGAGGAAGCAAAGATAACATCTCTGTCATTGTTATAGACTTGAAGCCCCAAAGAAAATTCAAGAAAAAAGAATAA 333 0.4114 MRYLKPWVIPEPEVKCIQRDKNDECLILASDGLWDVMTNEEACDFARRRILIWHKKNGNNSSSQQGQGPDPAAQYAAEYLSRLALQRGSKDNISVIVIDLKPQRKFKKKE 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00430 110 Gene3D - 1 110 IPR036457 -
Vimu10g00430 110 CDD PP2Cc 2 100 IPR001932 -
Vimu10g00430 110 ProSiteProfiles PPM-type phosphatase domain profile. 1 100 IPR001932 -
Vimu10g00430 110 PANTHER PROTEIN PHOSPHATASE 2 100 IPR015655 GO:0004722|GO:0006470
Vimu10g00430 110 SUPERFAMILY PP2C-like 3 102 IPR036457 -
Vimu10g00430 110 Pfam Protein phosphatase 2C 5 93 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00430 Vimu-Chr10 3225923 3227299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00430 2 109 PP2C-type Phosphatase Gene Family AT1G17550 69.444 6.14e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00430 K14497 - gmx:100812974 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01459 7 13866119 13868696 Vimu10g00430 10 3225923 3227299 PCT