Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00424 ATGGAGAATCACAAGATGGTAGCATCGGTGTCTGTTAAGGAGGAGATGGACAATAACCTTGCAGTGCAGGAAGAGGAAGATGTAGCAGATGTGGGTTCCAGCATGACCTTGGAAAGGGTCGCTGCAGCTAAGAAATTCATTGAGGACCATTACAGGTCTCAGATGAAACTCATCCAACAACGCAAAGAAAGGCGGTTAGAGCTAGAACAGAAGTTAGCATCTGCTCATGTACCAAAAGAGGAACAGATCAATCAATTGAAGGATTTAGAGAGCAAGGAAACCGAGTTTATGCGGTTAAAAAGACACAAAATATGTGTTGATGATTTTGAACTTCTAACCATTATTGGGAGGGGAGCCTTTGGGGAGGTAACACTCTGTCGGGAAAAAACATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAGTGACTGCATTGTGAAACTCTATTACTCTTTTCAAGATGATGAACACTTATATCTCATAATGGAATATTTGCCCGGTGGTGATATAATGACTTTGTTGATGCGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAGAGTGTTTTGGCCATAGAGTCTATTCATAAACATAATTACATCCACAGAAATGGTAGGCGCTGGAAAAGTCCCTTGGAACAACTACAACATTGGCAAATTAATAGGAGGAAGCTGGTAATTGCCTTCTGCCCCTGCACTCAGAGGTTATTTGATGCTTGGCTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCCCCTGAAGTATTACTCAAAAAGGGTTATAGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAAATGCTAGTTGGATATCCTCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATCGTGAACTGGAAAAATCACTTGAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAATATGCAGGTTGCTTTGTGGTGTTTCACATAGACTTGGCACTAATGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCGTATGGGACAGGCTCTATGAAACGGAGGCAGCATTTAAACCACAAGTCTTTGGAGAGCTTGACACTCAGAATTTTATGAAATTCGATGAAGTAAGACGTTACGATTTGGCAATGCTTCTTTTCTTCTTTGTCACAATAGATGCAGTTGAACAACCAAAACCAGCTAGAACTGGATCTGGACCCTTCAGAAAGAAACTCTTAACTTCTCAAGATCTCAGTTTTGTCGGTTATACATATAAGAACTTTGCTGCTGTCAAGGGGATGCGTCAATCTAATGGGTCATTGGCTCGTTCTGGTTCTAGACCTAGCCTCACCTCCCTCTTTCTCCTAAGAAAAGATTCAGATAGCATGTCACCACAGCGAACATCCATTGACTCCGCACACAGTAATGGATCTAACCATGACAACTACTAG 1542 0.4176 MENHKMVASVSVKEEMDNNLAVQEEEDVADVGSSMTLERVAAAKKFIEDHYRSQMKLIQQRKERRLELEQKLASAHVPKEEQINQLKDLESKETEFMRLKRHKICVDDFELLTIIGRGAFGEVTLCREKTSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDDEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRNGRRWKSPLEQLQHWQINRRKLVIAFCPCTQRLFDAWLAFSTVGTPDYIAPEVLLKKGYSVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVNWKNHLKFPEEARLTPEAKDLICRLLCGVSHRLGTNGADEIKAHPWFRDVVWDRLYETEAAFKPQVFGELDTQNFMKFDEVRRYDLAMLLFFFVTIDAVEQPKPARTGSGPFRKKLLTSQDLSFVGYTYKNFAAVKGMRQSNGSLARSGSRPSLTSLFLLRKDSDSMSPQRTSIDSAHSNGSNHDNY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00424 513 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vimu10g00424 513 FunFam Non-specific serine/threonine protein kinase 70 192 - -
Vimu10g00424 513 CDD MobB_NDR_LATS-like 43 104 - -
Vimu10g00424 513 FunFam Non-specific serine/threonine protein kinase 272 391 - -
Vimu10g00424 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 437 - -
Vimu10g00424 513 Gene3D Transferase(Phosphotransferase) domain 1 193 393 - -
Vimu10g00424 513 SUPERFAMILY Protein kinase-like (PK-like) 92 410 IPR011009 -
Vimu10g00424 513 Gene3D Phosphorylase Kinase; domain 1 70 401 - -
Vimu10g00424 513 MobiDBLite consensus disorder prediction 490 513 - -
Vimu10g00424 513 SMART pkinase_C_6 374 457 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu10g00424 513 ProSiteProfiles Protein kinase domain profile. 109 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00424 513 Pfam Protein kinase domain 272 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00424 513 Pfam Protein kinase domain 110 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00424 513 ProSiteProfiles AGC-kinase C-terminal domain profile. 374 465 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00424 Vimu-Chr10 3189605 3198729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00424 22 467 AGC Kinase Gene Family AT4G33080 64.097 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu10g00424 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00424 K08790 - zju:107424100 639.417