Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00411 ATGGATGTTTCCGAGTGCGAGTCCCTTCAGAAAGTGAAAGCAAAGGAACCAAACAAGGTTGGTTTTGAAAACGGCATCGTTTTGATGAAGGAAGAAGATGATGATGTTGAGTGGGGTCCACAACCGTTCGTGAAGAAGATATTAAAAATGGTGGAAGATGAGAGCTTGAACCCAATTGTGTCGTGGGGTGAAGGGCGTTGCAGTTTCGTGGTTTGGAATTCTGCTAAGTTCAGCAAAACCATTCTTCCAAACTACTTCAAGCACAGTAACTTCTCTAGCTTCCTTCGCCAACTTAACAACTATGGGTTTAAGAAGGTTAATCCAAAGCGTTGGGAGTTTGCATGTGAAGGTTTTCAACCAGGAAAAAGGCATTTACTGAAGAATATCGTGAGAAGAGGAAGAAAGAATAAGTTGTGTAATGAACAACTCCAAGGTGAAGTTGAGGAGCTGAAGAAGGAGAAGAACGTGTTAGCACTGGAGATTCTGAAGCTCACACAACGGCTTAAGGATTCACAGGTTCAACTTAACAATTTTGAAGAACGGCTTCGGTATGTTGAGTTGAAGCAATATCAGATGTTGGATTTCTTCGGCAGAATGGTCCAAGTGCCTGGTTTTGTCGACCAATTGGTTCACAAGGTTCAACAGAAAGATGGGGTTGATGGGGCAGACATGGTCAAGAGATGCAAATTGTTGGGACCTCAGTACTATTTGAGTTTCTCTAATAAGGGCACAAACACTAGCTCAAACTTTGGTTATTATAGACAGCAAGGTTGTGAACAAAATGGTATCTTGTCAGAGACTGTGAAAGATGATTCATACATATCTACACAAGGGCTGACTAATGGTTATGATGTGTCAGATGCTTATAATGGTGTGTTAGAAGAATTACTAAGTGAGAATTTTGATGAGGATGTAAGTGTAAGTGTGAATGAGTCAAATATATATCTTGAGTTGGAGAGTTTGATTGGATCCACAAAATGGATTGGTGGGTTGAATTAG 999 0.4064 MDVSECESLQKVKAKEPNKVGFENGIVLMKEEDDDVEWGPQPFVKKILKMVEDESLNPIVSWGEGRCSFVVWNSAKFSKTILPNYFKHSNFSSFLRQLNNYGFKKVNPKRWEFACEGFQPGKRHLLKNIVRRGRKNKLCNEQLQGEVEELKKEKNVLALEILKLTQRLKDSQVQLNNFEERLRYVELKQYQMLDFFGRMVQVPGFVDQLVHKVQQKDGVDGADMVKRCKLLGPQYYLSFSNKGTNTSSNFGYYRQQGCEQNGILSETVKDDSYISTQGLTNGYDVSDAYNGVLEELLSENFDEDVSVSVNESNIYLELESLIGSTKWIGGLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00411 332 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 Coils Coil 140 188 - -
Vimu10g00411 332 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 Gene3D - 36 133 IPR036388 -
Vimu10g00411 332 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu10g00411 332 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Vimu10g00411 332 FunFam Heat stress transcription factor B-4 36 133 - -
Vimu10g00411 332 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 240 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00411 Vimu-Chr10 3102444 3103527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00411 26 234 HSF AT5G54070 44.737 8.47e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu10g00411 HSF_DNA-bind 1.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00411 K09419 - gmx:100818430 268.855