Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00405 ATGCACCCCATGGAAAATGTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGTTGCACTCTTTTGGATGCAGTTATATCTGTCTGTGGGCATTTGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCAGGCTCTAGTTTGGGGACAGTGGCACAACAACTTTTCAGACAGTTCAGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTCAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCGAGGATTAAGGTTCGTCTGTTGTCAAAGAACCTGAAAATACTTTACACTAATTCTAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGGAGAATTTTCCACGGGACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCTACAGGTAGCCCTGAATATTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTCCCTGAGACACTTGGAGGAGCAAGAGTGTCCCCAATGCAGCCAGTGCCAAACACAGCCACTGGTCCTCACCAGCAAGCCATTCAAGCACTGGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTACATGTTATATCTCCAACTTCTCATCAGCACCAAAACTTGCCCTTTGCTCCAGTGGTTCATCCAGATGCCAGTGCTTTCCAGAGGTACAGATCAGACATTGGTCCTAATATGGCTTCCAATATTAGAAAGCAAAGCTTCATGAAGAGATCTTTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACATCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCATTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTATCTAATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGTTTGAAATCACTTTTGCCATCCAAAGAACCAACAACTGAAGAAACCAAGGCTAGATTATCTCCAAATGAAAGATTAAGTGTCCGAGTTTCACATCTACCCGAATCAAGCTCATCACAGGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAACTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCCTAAAACAGTGTCTCAACGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGGAATAATGCAATTCATCAACTAACCTTCAGATTAAGGATTATTCAGTATGTAAAACTTTTCAAAAGTGGGTGGCGCAGGACAAGTCTATCGCTGCATTATGAGAGTAGAATTATGCATACAAAATCAGAATTAGATGAGAAAAAAAGTGGCGGCGGCTTCTTTTCTGCAGGATCCAAGAACCCCCCTAGATCAGAATATACAATGATGGAAAAATATATTTGTTTTTGTTACAATGTTTTAAAGCTAAAACGAAGTAACTTGGAAAGTGCAGTTGATGATAGTGAAGGTGTGCCATCGAACATACGCATGAGTCAGCATGAATATGTTGATAACTTCCATACGTATAAATATTTGCCGTCACATGTCGGAAATGACATTAAAACTCAGAAAAAGAAGAAAGTCGCTCTCAAAGACTATGTAGCAGAAGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTACAAAGAGGACCAATAA 1992 0.4142 MHPMENVFSLPVAARADFIQFLLHSFGCSYICLWAFDSISPNRLCFLDGIYNVRNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKVRLLSKNLKILYTNSSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGEFSTGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVSPMQPVPNTATGPHQQAIQALAQAPLTQFPTPETEHDAIMRAILHVISPTSHQHQNLPFAPVVHPDASAFQRYRSDIGPNMASNIRKQSFMKRSFAFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSYLMAEVDQLSKRNQGLKSLLPSKEPTTEETKARLSPNERLSVRVSHLPESSSSQERMVDLQVNVRGQLSQIDLSICLLEFLKQCLNVSLVSMDANTHIAEGNNAIHQLTFRLRIIQYVKLFKSGWRRTSLSLHYESRIMHTKSELDEKKSGGGFFSAGSKNPPRSEYTMMEKYICFCYNVLKLKRSNLESAVDDSEGVPSNIRMSQHEYVDNFHTYKYLPSHVGNDIKTQKKKKVALKDYVAEGSDWDECTFEEAVRRVVADLAQYKEDQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00405 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Vimu10g00405 663 Gene3D - 345 419 IPR036638 GO:0046983
Vimu10g00405 663 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 509 IPR044658 -
Vimu10g00405 663 MobiDBLite consensus disorder prediction 175 199 - -
Vimu10g00405 663 SMART finulus 352 401 IPR011598 GO:0046983
Vimu10g00405 663 CDD bHLH_AtbHLH_like 351 403 IPR045239 -
Vimu10g00405 663 Pfam Helix-loop-helix DNA-binding domain 350 395 IPR011598 GO:0046983
Vimu10g00405 663 Coils Coil 352 372 - -
Vimu10g00405 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 411 IPR036638 GO:0046983
Vimu10g00405 663 MobiDBLite consensus disorder prediction 409 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00405 Vimu-Chr10 3066185 3069611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00405 15 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.023 3.38e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g00405 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00405 - - gmx:100807098 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00405 10 3066185 3069611 Vimu10g00405 10 3066185 3069611 ECH
Vimu7g01442 7 13701052 13701849 Vimu10g00405 10 3066185 3069611 PCT