Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00400 ATGGGGGTGATCTTGGCTCTGATTCTGCAGCTGTTGAAGCTCTGCGTCATTGGCTTTGTTGTGGCATTTCAAGGATCTCAAGCACCTGCTCCTATCCATCTTGGACTGCCATGGGGAAGCAGTCCACCAAGATCACCTTCAGATCCTAATGGGTTTGTTATATCCCCATCTCCAAAAACCATACATGTGAATCCTTCCCCCAGTGAAGCACCTGGTTTTATACACCCAAAAGAACCATGGAGAACCATTGCACCAAGCCTTCAAGAAGTACCAAATGGGCCATTTTTTTTACCACCTCCTAAATCAGCTCCAACTCCCGAGAAGACAAGAGAATCTGAACCATCCATATCTCCTAGTCCTGGTGCAAGCACCATAACATCAACATCACCACCGTATAATGGTGCTCTTGGACCATCAACTGCAGAAGGGAACGTTTCACCATCCATACAACTAAGTCCACCTCAAAGCAAAACACCTGTTTTTAGTCCTCCTGTTTTCACACCAATTGCTCCAGCTCCCATTGCAGTACCTTCAGGGAATTTGACAAAAACTTCACCAGTCAGCCAACCAACTGAACATGGAAGTTTGCCTCCTAAGACTGATGAGAGGAATAAGAGTCACAAGCCTGAGCCAGCTTTTCCAGCCGTAGTTCCAATACCTTCTACACAGTTGCCCAAATATTCACCAGTAAGCCAGCCAAGTGAAAATGGAAGTTTACCTCATAGAGATGGTGCAAATAATGGTCACATCCCTGAGCCAATTTCACCAGGCATTTTTCCTGAACATCCACCAGTGAGTCAGCCAACTGAACATGGAAGTTGGCCTCCAACTGTTCCCAGAGGTCACACATTGGAGCCAGTTTCACACGCCCCAGTTGCACAACCCCCTACAAATTTGCCAAAAAATTCGTCTGCTAGTCAACCAACTCATGGAAATTCCCCCCCTGATCTTCACAATGGAACTGCAAATAATGGTCACACTCACACCCCAGCACAAAAAATTTCACCATCAGTTACACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATCGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGTCACTACCGGCTATAGTACATTCCCCACCTGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGTGATGGAGAACCAGTTTCTGCTCCTCCATACAAAACACCAAAGCCGCTACCCGCCATAGTACATTCCCCTACTCAAGTTCCTCCTTCTCCACATGTAGCAAGGCAATTTCACTACGCTCCTGAACCATCTCCTAATAAAGATTACTCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGGAACACAATCAGAAGCCCTGCTCCTGCATCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTCGGCAAAGACAACATGCTCCATCACCATTGAACACAGTCTCCCCGTTTCGGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCCCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCGGTCCTACCTCGTAATCAAGCACTACCACCGCCACCTCCCAATGAAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTATCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCGGCAAACCTGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAGGAGGCAGCATAAAGGTGGAATTAGCAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGGCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGACATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGTATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGTTTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTGGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAGCAGCCCCCTTGGTTGGAGTGCTAGGATAAAGATAGCACTTGGCGCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTCGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTCGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTACAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGATGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCAGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGGCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAACGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 3714 0.4521 MGVILALILQLLKLCVIGFVVAFQGSQAPAPIHLGLPWGSSPPRSPSDPNGFVISPSPKTIHVNPSPSEAPGFIHPKEPWRTIAPSLQEVPNGPFFLPPPKSAPTPEKTRESEPSISPSPGASTITSTSPPYNGALGPSTAEGNVSPSIQLSPPQSKTPVFSPPVFTPIAPAPIAVPSGNLTKTSPVSQPTEHGSLPPKTDERNKSHKPEPAFPAVVPIPSTQLPKYSPVSQPSENGSLPHRDGANNGHIPEPISPGIFPEHPPVSQPTEHGSWPPTVPRGHTLEPVSHAPVAQPPTNLPKNSSASQPTHGNSPPDLHNGTANNGHTHTPAQKISPSVTPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPASTPSRSFSWKKGGEPVSAPVYKTPKSLPAIVHSPPVVSPALTPSRSFNWKSDGEPVSAPPYKTPKPLPAIVHSPTQVPPSPHVARQFHYAPEPSPNKDYSPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAPSPLNTVSPFRSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPVLPRNQALPPPPPNEDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANLQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISRRQHKGGISKGMIAVISLSVFLVVVLCFAAAWALFKFRDHSSKLTSTPHVLSPPLTKAPGAAGSAVGGRLASASTSFRSSIAAYAGSAKTFSMYDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKESSPLGWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVTDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00400 1237 SUPERFAMILY Protein kinase-like (PK-like) 835 1127 IPR011009 -
Vimu10g00400 1237 ProSiteProfiles Protein kinase domain profile. 854 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 295 340 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 522 549 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 341 355 - -
Vimu10g00400 1237 FunFam Receptor-like serine/threonine-protein kinase ALE2 930 1147 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 468 483 - -
Vimu10g00400 1237 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 178 195 - -
Vimu10g00400 1237 FunFam receptor-like serine/threonine-protein kinase ALE2 827 929 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 176 602 - -
Vimu10g00400 1237 CDD STKc_IRAK 860 1128 - -
Vimu10g00400 1237 PANTHER OS01G0750732 PROTEIN 590 1153 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 490 509 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 109 156 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 430 446 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 224 241 - -
Vimu10g00400 1237 Pfam Protein tyrosine and serine/threonine kinase 857 1127 IPR001245 GO:0004672|GO:0006468
Vimu10g00400 1237 Gene3D Phosphorylase Kinase; domain 1 826 929 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 584 601 - -
Vimu10g00400 1237 Gene3D Transferase(Phosphotransferase) domain 1 930 1156 - -
Vimu10g00400 1237 ProSitePatterns Protein kinases ATP-binding region signature. 860 882 IPR017441 GO:0005524
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 91 164 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 45 64 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 39 78 - -
Vimu10g00400 1237 MobiDBLite consensus disorder prediction 365 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00400 Vimu-Chr10 2978338 2988128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00400 263 1233 Receptor kinase-like Gene Family AT5G56890 52.358 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu10g00400 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00400 - - gmx:100802309 1912.89