Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00393 ATGCATGAACCAATGATACCAAATTATCGTTATTCAGTGGTGTCTTCTCCTATGTCTATAGATCTCAATGAAGATCATACACACACTCTCTTCAGTACAATCCATCAAGTCTCTTCTTCATCTACTTCTATTCTCTTCAACCCAGATCAGGCTCAAGGAGGATTTTGCTATTGTGAATCAAAACATCTTCAAGAGGCCCAGAAGATTGTCTGTTTCGGTGGATCATGGGATCATCAAGCAGAAAAGATTGAAAAGAAAAGTGATCTCGAGCTTAGACTTTGGGAGAAAGAAGAGTGTGACAATCTTCAACGCGAAGACAGTTCAACTAGCTGGATGCCTTCAAAGATGAGAATGGTGCGGAAAATTATGGTTTCAGATCAAACAAGTTCTCATAAGGCAGATATCTCTAAGTCTAAGCAGATGAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTATAGCTCTTCTTCAAACAACAACAGTGTCACTGCTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCTAAGTCTCTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGCGCCATTGTTACAGCTGCAACAACAGCAAATGGAACAAAGAGGTTGGAGGCTAAGAAATCTGAAGCGAAGAAGGGGAAAAAGTTGCATAGCAAAGGGAAAAAGCTCAAAACTGGGAGTGCACCAGTGCTGGTGAAAAAGAAGCGTAAACCTGCCAAGCATGGGAAGAAGTTCGGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTCCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGTTTCCCCTCAGATCGCTACATCTCTTAG 927 0.4261 MHEPMIPNYRYSVVSSPMSIDLNEDHTHTLFSTIHQVSSSSTSILFNPDQAQGGFCYCESKHLQEAQKIVCFGGSWDHQAEKIEKKSDLELRLWEKEECDNLQREDSSTSWMPSKMRMVRKIMVSDQTSSHKADISKSKQMKAKEKNPTLSQLVTDDSNYSSSSNNNSVTARVCADCHTTKTPLWRTGPTGPKSLCNACGIRQRKARRAIVTAATTANGTKRLEAKKSEAKKGKKLHSKGKKLKTGSAPVLVKKKRKPAKHGKKFGAFEDLSVRFQQVFPQDEKEAAILLMALSHGLLHGFPSDRYIS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00393 308 Gene3D - 169 264 IPR013088 GO:0006355|GO:0008270
Vimu10g00393 308 MobiDBLite consensus disorder prediction 124 165 - -
Vimu10g00393 308 CDD ZnF_GATA 173 222 IPR000679 GO:0006355|GO:0043565
Vimu10g00393 308 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Vimu10g00393 308 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Vimu10g00393 308 MobiDBLite consensus disorder prediction 145 165 - -
Vimu10g00393 308 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Vimu10g00393 308 SMART GATA_3 168 221 IPR000679 GO:0006355|GO:0043565
Vimu10g00393 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 208 - -
Vimu10g00393 308 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00393 Vimu-Chr10 2909396 2910774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00393 107 300 C2C2-Gata Transcription Factor Family AT4G26150 35.242 1.24e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g00393 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00393 - - vun:114162648 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01424 7 13553404 13554649 Vimu10g00393 10 2909396 2910774 PCT