Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00390 ATGACACAGACACCACAGCACAAATATGGAGGAACATTCTTTTACATCCTCGGAGGAATTGTTGTGCTGGTCATAGTGTTGATTTTTTTGTATGTACTTCGGAAGCGTCTAAAATGGTCACCACAGAATATGACAAAACAGCAAGAAATTGGGAAACACACAGAATCAGCAGATATAATGCAGATGATATTTTCATCTAATCAACAGTCAGGGTCCAAAGAGCTCTGTAGTGGAAACTTTAGGACAATTAACTGCTTTGACTACCAGACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGGAAAGTTGGCAGATGGAAGGGTGGTTGCCGTTAAGAAATTGTCTCTCAACAAATCTCAACAGGGAGAAAAAGAATTTCTGGTTGAGGTGAGAACAATCACTAGTATCCAACACAAAAATCTGGTTCGTCTTCTTGGATGCTGCGTAGATGGACCACAAAGGATACTTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTTATTCATGGAGCTTGGGATTGTATTGATGGAACAATTCTTTCTTTTGACTGCTTCATGAATGCAGAAAATAGTGATCATTTTCTGAATTGGAAAACTAGATTCCAAATTATTCTGGGCGTAGCCAGAGGACTACAATACCTTCATGAGGATTCACACCAAAGAATTGTTCATAGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAGGATTGGGGACTTTGGGCTAGCTAGATTTTTCCCGGAAGATCAAGCTTATCTTAGCACACAGTTCGCTGGAACACTAGGTTATACTGCTCCTGAATATGCCATTAGAGGAGAATTATCAGAAAAGGCAGATATCTATAGTTTTGGAGTTGTCTTGCTTGAAATAATCTGTTGCAGGAAAAACACAGACCACACTTTGCCATCAGATATGCAGTACCTCCCTGAATATGCATGGAAACTGTATGAGAAGGCAAATATATTAGACATTGTAGATCCGAAACTGCAAGAACATGGATTGGTAGAAAAGGATGTTATGCGAGCAATCCACCCTGATGCACATTTGAGACCTCCAATGTCAGAGATCGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGTATCGAGTAGCAAAAAAGGATGATGATAAACAACATTTAGGAGCAATATATCAGGGTTTAACATCTCCCATATAA 1266 0.3902 MTQTPQHKYGGTFFYILGGIVVLVIVLIFLYVLRKRLKWSPQNMTKQQEIGKHTESADIMQMIFSSNQQSGSKELCSGNFRTINCFDYQTLKNATMNFHADNFLGSGGFGPVYKGKLADGRVVAVKKLSLNKSQQGEKEFLVEVRTITSIQHKNLVRLLGCCVDGPQRILVYEYMKNRSLDLFIHGAWDCIDGTILSFDCFMNAENSDHFLNWKTRFQIILGVARGLQYLHEDSHQRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVVLLEIICCRKNTDHTLPSDMQYLPEYAWKLYEKANILDIVDPKLQEHGLVEKDVMRAIHPDAHLRPPMSEIVALLTFKIEMVTTPMRPAFLYRVAKKDDDKQHLGAIYQGLTSPI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00390 421 Gene3D Transferase(Phosphotransferase) domain 1 195 390 - -
Vimu10g00390 421 Pfam Protein tyrosine and serine/threonine kinase 101 322 IPR001245 GO:0004672|GO:0006468
Vimu10g00390 421 SMART serkin_6 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00390 421 CDD STKc_IRAK 104 382 - -
Vimu10g00390 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vimu10g00390 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 401 - -
Vimu10g00390 421 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00390 421 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 194 389 - -
Vimu10g00390 421 SUPERFAMILY Protein kinase-like (PK-like) 79 384 IPR011009 -
Vimu10g00390 421 FunFam Cysteine-rich receptor-like protein kinase 10 62 174 - -
Vimu10g00390 421 Gene3D Phosphorylase Kinase; domain 1 67 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00390 Vimu-Chr10 2877118 2880940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00390 86 397 Receptor kinase-like Gene Family AT1G56120 47.003 9.84e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu10g00390 PK_Tyr_Ser-Thr 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00390 - - gmx:100799624 645.195