Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00383 GATATGGTGGATCCTGTTTCAAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCAGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTGCCTGCAATTCTTCTTCTTTTTCTTCTAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACTGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCTCGCTTCCGCCGTGCACCGCCCCAACCCCAACCCCAATCCCAACCCCAGGTCCCACCGCAACCACTCCCACAACCACAACTTCAACCCCAACCTCAAACCCAACAAGGTTTCACTTTGGATTTTGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCCCCTCTCTCCTCCTCCCACCGGAAAAAGTGCCGCGACGCCGCGCTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAAAAACCGATCAAGGGTTCTCCTTTTCCTCGTGGGTACTACAAGTGCAGCACCGTCAGAGGGTGCCCGGCGAGGAAGCACGTGGAACGCGCGCAAGATGACCCGAAGATGCTTATAGTGACGTACGAGGGCGAGCACCGTCACGCGCTGCCGTTGCCTGCCGCTACCGGCGGTGGTTTCGGGCTTTGA 882 0.5556 DMVDPVSRTRMEEQLAIQEAASAGLKSMEHLIRLLSPSACNSSSFSSNNNLDCSQITDFTVSKFKQVINLLNRTGHARFRRAPPQPQPQSQPQVPPQPLPQPQLQPQPQTQQGFTLDFVKPTILNSKPCNKDETLTLSTTTTTSSSFLSSVTNDASVSDGKIGPFLPPSAAKPPLSSSHRKKCRDAALSAKPSCHCSKKRKSRVKQSIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPFPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHALPLPAATGGGFGL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00383 293 MobiDBLite consensus disorder prediction 79 110 - -
Vimu10g00383 293 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00383 293 SUPERFAMILY beta-sandwich domain of Sec23/24 80 126 - -
Vimu10g00383 293 MobiDBLite consensus disorder prediction 85 105 - -
Vimu10g00383 293 Pfam Plant zinc cluster domain 180 219 IPR018872 -
Vimu10g00383 293 SMART WRKY_cls 221 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00383 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 282 IPR044810 GO:0003700
Vimu10g00383 293 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00383 293 SUPERFAMILY WRKY DNA-binding domain 219 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00383 293 Gene3D WRKY domain 207 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00383 293 FunFam WRKY transcription factor 65 205 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00383 Vimu-Chr10 2813140 2814320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00383 3 279 WRKY Transcription Factor Family AT2G24570 53.420 1.94e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g00383 WRKY 2.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00383 - - gmx:100127391 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00383 10 2813140 2814320 Vimu10g00383 10 2813140 2814320 ECH
Vimu7g01403 7 13425704 13427091 Vimu10g00383 10 2813140 2814320 PCT