Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00376 ATGAGTAGTTTCCTGAACGGTGCTTCGCCGATGCGGCAAGCGGCGGAGACGGAGAGGGAGAGTGATATTGAGGCTGGTCCTGCCACTCGCTCTTCTGACCTCGATGATGGAGATTTATCCGATCCGTTTGATATTGCCAGAACTAAGAACGCTTCCGTTGAACGCCTCAGGCGTTGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAGGCAAATATTGAGAAAGATTCGTGCGCATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGTGCCAGGAAATGAACCTATTAAACCTCCTCCGACCCCAATTGCTGGTGAATTTCCAATTGGACAAGAACAACTTGCTTCAATTTCAAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTGTAGGACTATCAATTTTGTTGAAAACCAATTTAGAGAAGGGAATTCATGGTGATGATGCTGATTTACTGAAACGTAGGAATTCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGTAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCACTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTATTAGAGGCGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTAAATATTGGTGACCAGGTCCCTGCTGATGGAATTCTTATCAGTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACAATGCTGCGCAAAAAGGATCGTTGGAGACGCACGTTGGTTTCTCGCTGGTGGAGGTGCGAAAGCTTCTTTCGTGGTGGTTTTCGCTTGCGGCGGTGGCGCCTTTGCAGTGAAGTCGCATTCGCACCACAACGGCGACTTGCTTTGCCTTCCATGGCGGTTGTGTTTCTGGTTTTCTTGCAGGTTACTGGTGTTGGTATCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTGTCGTCTTGGTTGTACTACTGGCTAGATATTTCTCTGGGCATACTGAAAACCCGGATGGTTCGCCTCAATTTAAAGCTGGCAAGACTAAAGTTGGTGATGCTGTTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATCGTTGTGGTTGCAGTTCCGGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACTATGAATGAGATGACTGTGGTTGAGGCTTATGCTGGGGGTAAGAAAATTGATCCTCCCCACGAATTGGAGAATACTATGCTGCGCTCCCTGCTCATTGAGGGTGTTGCGCTGAACACTAATGGTAGTGTTTATGCACCAGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCAACGGAAAAGGCAATTTTACATTGGGGAATACAGCTTGGGATGAATTTTACGGATGCTAGATCCAAGACATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAGAGAGGCGGTGTTGCATTACAAACGGCCGACTCTAACATCCATATACACTGGAAAGGTGCTGCCGAAATAGTCCTAGCCTGCTGTACTGGCTATATTGATGCAAACGACCAGCTGGTGGGGATGGATGAAGAGAAGATGTCATTTTTCAAAAAGGCTATTGAAGACATGGCAGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATACGAAAAGGAAAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGCCGTCCTGGTGTAAAAGATGCAGTGCTACTTTGTCAAAAGGCTGGGGTTAAGGTGAAAATGGTCACTGGTGACAACGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTGGGTTCATTCGCTGATGCTACAGAACCAAACATCATTGAAGGAAAAACATTTCGTGGCCTGTCAGATGCAGAGAGAGATGAAATTGCTGATAGGATATCGGTAATGGGACGGTCATCTCCCAATGACAAATTATTGCTAGTACAAGCATTGAGGAGGAAAGGTCATGTTGTTGCTGTAACTGGTGATGGAACAAATGATGCTCCTGCCCTTCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTGAGATGGGGACGATCTGTCTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCCCTAGTGATAAATGTTGTTGCAGCAGTTTCGACTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGACACCCTGGGAGCGCTAGCCCTGGCAACGGAACCACCAACTGATCACCTCATGGATCGAACTCCTGTTGGTCGAAGAGAGCCTCTAATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTATCTGTCTTACTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTTTGAACCATGACAACAATGTGCATGCAATCAAAGTGAAGAACACTTTGATATTTAACGCATTTGTTCTCTGTCAAGTAAGTCTTCATGACTTTGCAATGGGAAAATAG 3156 0.4385 MSSFLNGASPMRQAAETERESDIEAGPATRSSDLDDGDLSDPFDIARTKNASVERLRRWRQAALVLNASRRFRYTLDLKKEEEKRQILRKIRAHAQAIRAAYLFKAAGGVPGNEPIKPPPTPIAGEFPIGQEQLASISREHDTAALQQYGGVVGLSILLKTNLEKGIHGDDADLLKRRNSFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLRKKDRWRRTLVSRWWRCESFFRGGFRLRRWRLCSEVAFAPQRRLALPSMAVVFLVFLQVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLVVLLARYFSGHTENPDGSPQFKAGKTKVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNEMTVVEAYAGGKKIDPPHELENTMLRSLLIEGVALNTNGSVYAPEGANDVEVSGSPTEKAILHWGIQLGMNFTDARSKTSIIHVFPFNSEKKRGGVALQTADSNIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMSFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFADATEPNIIEGKTFRGLSDAERDEIADRISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLNHDNNVHAIKVKNTLIFNAFVLCQVSLHDFAMGK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00376 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 157 1042 IPR023298 -
Vimu10g00376 1051 PANTHER CATION TRANSPORTING ATPASE 100 1042 - -
Vimu10g00376 1051 Pfam Cation transporter/ATPase, N-terminus 152 217 IPR004014 -
Vimu10g00376 1051 Gene3D - 51 106 - -
Vimu10g00376 1051 Pfam Cation transporting ATPase, C-terminus 941 1042 IPR006068 -
Vimu10g00376 1051 MobiDBLite consensus disorder prediction 1 44 - -
Vimu10g00376 1051 Gene3D - 560 756 IPR023299 GO:0000166
Vimu10g00376 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 556 761 IPR023299 GO:0000166
Vimu10g00376 1051 Pfam Ca2+-ATPase N terminal autoinhibitory domain 39 83 IPR024750 GO:0005516
Vimu10g00376 1051 Gene3D - 547 901 IPR023214 -
Vimu10g00376 1051 Gene3D - 200 255 - -
Vimu10g00376 1051 Gene3D - 427 1006 - -
Vimu10g00376 1051 SUPERFAMILY Calcium ATPase, transduction domain A 270 349 IPR008250 -
Vimu10g00376 1051 SFLD Haloacid Dehalogenase 532 908 - -
Vimu10g00376 1051 CDD P-type_ATPase_Ca_PMCA-like 174 989 - -
Vimu10g00376 1051 Pfam E1-E2 ATPase 408 528 - -
Vimu10g00376 1051 Pfam E1-E2 ATPase 270 348 - -
Vimu10g00376 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 552 558 IPR018303 -
Vimu10g00376 1051 SFLD p-type atpase 532 908 IPR044492 -
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 749 901 - -
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 200 257 - -
Vimu10g00376 1051 MobiDBLite consensus disorder prediction 15 44 - -
Vimu10g00376 1051 NCBIfam HAD-IC family P-type ATPase 491 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00376 1051 NCBIfam HAD-IC family P-type ATPase 823 936 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g00376 1051 NCBIfam calcium-translocating P-type ATPase, PMCA-type 409 1042 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 560 756 - -
Vimu10g00376 1051 SUPERFAMILY HAD-like 548 961 IPR036412 -
Vimu10g00376 1051 Pfam haloacid dehalogenase-like hydrolase 547 870 - -
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 9 plasma membrane-type 405 574 - -
Vimu10g00376 1051 Gene3D - 409 426 - -
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 873 1048 - -
Vimu10g00376 1051 FunFam Calcium-transporting ATPase 51 107 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 749 760 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 880 892 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 550 564 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
Vimu10g00376 1051 PRINTS P-type cation-transporting ATPase superfamily signature 771 781 - -
Vimu10g00376 1051 SMART Cation_ATPase_N_a_2 151 222 IPR004014 -
Vimu10g00376 1051 Gene3D - 173 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00376 Vimu-Chr10 2738089 2756772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00376 1 1041 Primary Pumps ATPases AT5G57110 67.627 0.0 1341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00376 K01537 - gmx:100820121 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00376 10 2738089 2756772 Vimu10g00376 10 2738089 2756772 ECH
Vimu7g01390 7 13328484 13344648 Vimu10g00376 10 2738089 2756772 PCT