Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00375 ATGGGCGAGGGGGAAGCAAAAGCGGTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCTAAAAAACAGCAAGTGGAAGCAGCGAAGAAAAAGAGTTCCGAAACTCGGAAATTGATTTTTGGCAGAGCCAAACAGTATGCAAAGGAATATGAGGAGCAGCAAAAGGAACTAATTAGGTTGAAGCGTGAAGCCAAGCTAAAGGGAGGGTTTTATGTTGACCCTGAAACTAAGCTTTTGTTCATCATCAGGATTCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCAACCTTGAATATGCTGCATAGGGTAGAGCCGTATGTTACCTACGGGTATCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGAGGCTTTGGAAAAGTGAACAAGCAGAGAATTGCTCTGACTGACAATTCTATTATAGAACAGACTTTGGGGAAGCATGGGATCATTTGCATAGAAGATGTGATCCACGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCTAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGACGCTGGCAACAGGGAAGATTATATAAATGAGCTCATTAGAAGGATGAATTAG 735 0.4259 MGEGEAKAVVPESVVKKEKRNEEWALAKKQQVEAAKKKSSETRKLIFGRAKQYAKEYEEQQKELIRLKREAKLKGGFYVDPETKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVNKQRIALTDNSIIEQTLGKHGIICIEDVIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00375 244 Gene3D - 190 244 IPR036919 -
Vimu10g00375 244 Gene3D - 85 189 IPR036919 -
Vimu10g00375 244 FunFam 60S ribosomal protein L7 85 189 - -
Vimu10g00375 244 FunFam 60S ribosomal protein L7 190 244 - -
Vimu10g00375 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Vimu10g00375 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Vimu10g00375 244 NCBIfam 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vimu10g00375 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Vimu10g00375 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Vimu10g00375 244 Coils Coil 50 74 - -
Vimu10g00375 244 PANTHER 60S RIBOSOMAL PROTEIN L7 8 244 IPR039699 -
Vimu10g00375 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00375 Vimu-Chr10 2716684 2718997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00375 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.426 9.61e-158 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00375 K02937 - gmx:100500011 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00375 10 2716684 2718997 Vimu10g00375 10 2716684 2718997 ECH